Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04550 ATGAAACCAACCAAATTCATATCATCATTTTTATTCTTATTATTACTAGCCACTAAATCTTTCACAGCAGAATCAAAATGTAGCAAAACTTGTAACATAGCTTTAGCTTCATATTTTCTAACAAATGATTCATATTCAAATCTAACATATGTTTCAAAAATCATGCAATCAAATCTTGTTACAAAACCAGAAGATATTGTCAGCTACAACACAGACACAATAAAAAGCAAAGATTCTGTTCAATCTTTTACAAGAGTTAATGTTCCATTTCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCAATACCATGTTGTAAGAGGAGATACATATTTGTCTGTTGCAAACAATAGTTATTCCAATTTAACAACTGCTGAATTGTTGAATAGCTTTAATAGTTATCAATCTAATGATATTCCTGATACTGCAACTCTTAATGTTACTGTTAATTGTTCTTGTGGGAATAGTGATGTTTCTATGGATTATGGTTTGTTTATTACTTACCCTCTTAGAAGTGAAGATTCTTTGCAATTGATTTCAAATAAGACTCAAATTGATGCTGAGTTGCTTCAAAAGTATAATCCTGGTGTCAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGAAAAGACCAAAATGGTAACTATGTTACTTTTCACACAAGCACTGAAGGCCTATCAGGTGGAGTTATCGCTGGAATATCTATTGGAGCAGTAATAGGACTATTGCTATTCGCATTTTGTATTACATATTACCGAAAGAAGAAAGTACGGAAGCAAACTTTGCACTCAGAAGAATCCAGCGCGACCTTCGCTCAAGTTAAGAATGATGAAGTCTCTGGTAATGCTACATATGGAACTTCAGACTTTGCGAGTCCTGCTAATATGATCGGCATTAGGGTGGAAAAGTCAGGGGAGTTTTCATATGAAGAACTAGCTAATGCCACAAATAACTTCAATATGGCTAATAAAATCGGTCAAGGTGGTTTCGGTGAAGTATTTTACGCAGAACTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAGCTTAAGGTGTTGACACGCGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGCGTCGAGGGATCCCTTTTTCTTGTCTATGAATACATTAATAATGGAAACTTAAGCCAACATCTACGCAGTTCAGACGGAGAACCATTGCAATGGTCTACTAGGGCTAACATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACCGTGCCTACATATATTCATCGCGACATAAAGTCAGAAAATATTTTATTAGACAAAAACTTCCGTGCTAAGGTTGCAGATTTTGGATTAACTAAGCTGATTGAAGCTGGAACTTCATCAGTTCCAACTGCTAATATGGCAGGAACATTTGGTTACATGCCACCAGAATATGCATATGGTAGTGTTTCTTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTATTTGAACTAATTTCTGCTAAAAGAGCTATAGTAATGGGTGCTGAATTAAAGGGTCTTGTAGCTTTGTTTGATGAAGTTTTTGATGGTCCAAATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGACTTGGAGAAAACTATTCAATTGATTCAATTTTCAAGATGGCACAAATTGGCAAAGTATGTACTGAGAGTGATCCAAGACAACGTCCAAATATGAGTTCTGTTGTAGTTGCACTTACCACGTTAACTTCAACTACTGAGGATTGGGATATCACTTCTATATATAAAAATTCAAATCTTGTAAATTTAATGTCTGGAAAATAG 1854 0.3517 MKPTKFISSFLFLLLLATKSFTAESKCSKTCNIALASYFLTNDSYSNLTYVSKIMQSNLVTKPEDIVSYNTDTIKSKDSVQSFTRVNVPFPCDCINDEFLGHTFQYHVVRGDTYLSVANNSYSNLTTAELLNSFNSYQSNDIPDTATLNVTVNCSCGNSDVSMDYGLFITYPLRSEDSLQLISNKTQIDAELLQKYNPGVNFSQGSGLVYIPGKDQNGNYVTFHTSTEGLSGGVIAGISIGAVIGLLLFAFCITYYRKKKVRKQTLHSEESSATFAQVKNDEVSGNATYGTSDFASPANMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVFYAELNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSDGEPLQWSTRANIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFRAKVADFGLTKLIEAGTSSVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLFELISAKRAIVMGAELKGLVALFDEVFDGPNPIEGLKKLVDPRLGENYSIDSIFKMAQIGKVCTESDPRQRPNMSSVVVALTTLTSTTEDWDITSIYKNSNLVNLMSGK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04550 617 Gene3D Phosphorylase Kinase; domain 1 296 393 - -
Trre9g04550 617 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Trre9g04550 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Trre9g04550 617 FunFam PTI1-like tyrosine-protein kinase 3 394 603 - -
Trre9g04550 617 SMART serkin_6 323 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04550 617 FunFam LysM receptor kinase 2 302 393 - -
Trre9g04550 617 Gene3D Transferase(Phosphotransferase) domain 1 394 610 - -
Trre9g04550 617 CDD STKc_IRAK 329 586 - -
Trre9g04550 617 ProSiteProfiles Protein kinase domain profile. 323 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04550 617 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 11 603 IPR044812 GO:0019199|GO:0045087
Trre9g04550 617 Pfam Protein tyrosine and serine/threonine kinase 324 587 IPR001245 GO:0004672|GO:0006468
Trre9g04550 617 SUPERFAMILY Protein kinase-like (PK-like) 307 589 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04550 Trre-Chr9 52878762 52882976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04550 7 617 Receptor kinase-like Gene Family AT3G21630 54.720 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04550 PK_Tyr_Ser-Thr 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04550 - K13429 mtr:11432279 1015.37