Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04540 ATGTTAGGGTTTGGAGGACAAAGTTGCAGTGAGATTTCATCTATGGAACATAATCATATGATGAATATGGAAACTAATGTTAATAGGAAGTTTTTTTCATTTCCTTTGAGTAACAACAACTCTTCTGGAATTCAACTTCATCATAACTACAATCAGAACAACAACAACACTTCTTCAAGGGATAAAATCATGGCACATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTGGAGGAGTCATGTGCAAGATGTGAAGCTGTGAATGGCTCATCAGGAAGGAGAAGTTCTTGCATAGGTGAAGATCCAGGTTTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTATGAGCAAGAACTCACAAAGCCTTTCAAAGAAGCTATGCTTTTCCTTTCAAGAATTGAGTCTCAGCTTAAGGCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAACCAGCTTCACATAATGAGATTGATATGCATGAGAACAACATTGATACTCAAGGTGAAGATCAGGAGTTAAAAGTGCAGCTTTTGCGCAAGTATAGTGGATATCTTGGTGGCCTCAAGAAAGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTCGGCAGCAACTACTTGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAAACTCAAAAGCAAGCTCTAGCAGAATCCACAGGCCTAGATTTGAAGCAGATCAACAATTGGTTCATTAATCAAAGAAAACGTCACTGGAAACCTTCTGAAGATATGCAATATGCTGTGATGGATGCAACAAACTACTACATGGAAAATGTAATGTGCAAATCATTTCCTATGGATGCTGCCATGCCTATGCTTCTTTAG 924 0.3983 MLGFGGQSCSEISSMEHNHMMNMETNVNRKFFSFPLSNNNSSGIQLHHNYNQNNNNTSSRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCARCEAVNGSSGRRSSCIGEDPGLDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSEPASHNEIDMHENNIDTQGEDQELKVQLLRKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSETQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQYAVMDATNYYMENVMCKSFPMDAAMPMLL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04540 307 Pfam KNOX1 domain 61 99 IPR005540 GO:0003677|GO:0005634
Trre9g04540 307 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Trre9g04540 307 SMART KNOX2_2 109 160 IPR005541 GO:0003677|GO:0005634
Trre9g04540 307 Pfam KNOX2 domain 112 158 IPR005541 GO:0003677|GO:0005634
Trre9g04540 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 280 - -
Trre9g04540 307 ProSitePatterns 'Homeobox' domain signature. 248 271 IPR017970 GO:0000981|GO:0006355
Trre9g04540 307 Pfam ELK domain 190 211 IPR005539 GO:0003677
Trre9g04540 307 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Trre9g04540 307 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Trre9g04540 307 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
Trre9g04540 307 SUPERFAMILY Homeodomain-like 212 284 IPR009057 -
Trre9g04540 307 SMART ELK_2 190 211 IPR005539 GO:0003677
Trre9g04540 307 SMART HOX_1 212 277 IPR001356 GO:0003677
Trre9g04540 307 CDD homeodomain 222 274 IPR001356 GO:0003677
Trre9g04540 307 Gene3D - 208 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04540 Trre-Chr9 52759174 52763024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04540 60 300 Homeobox Transcription Factor Family AT1G62360 67.059 2.46e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre9g04540 KNOX2 8.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04540 - - mtr:11431352 492.271