Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04539 ATGAGTTTAGGGAAATATGAGTTAATTTATGAGTGGTTCCAATTCCAAATCACAACTCCCAAGCCCGATAGACCTGGTAGCATCACAAGCTGTTCTATAATAAATAACCTTGAGGGAGCTAACTCTGTCCATTGTTTGTTTGCGGTAACTCGACCCATCCATCTTGTATTCACTTCTGCTAGTCATCGCATCCGCAATCAATCATCTTCATCACTCACAGGCCATAAACATTTAATTTTGGGAATCAACAACAACTTGATGCCAAGGGAATATGAAATCGACATTCGTCCATTAATGGATGATCGACGACGACAAGACATAGCAGCGTTTATTATTCAAGTAAAGGTTGCGTTTAAAGATAACAAGGAAAAATATTCTGAGTTTGAACAAGTCATGAAGGATTACAAGGATCACAAAACTGGAACATTAAGTGTCGTTCAAATGGGGAACAAGCTGTTTAAAGGACACACTGATTTACATTTGGAATTCACCAACTTGATGCCAGATGAATATCAAATCAGACTTCCATTGTATCATGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATCAAGTCAAACTTGTGTTTCAAAATAACATGGAAATATATTTTGATTTTTTACAAATCATCAATGATCACAAGGTTCAAGGAATTGACATAAGAGGTGTAGCAGCAATAGTGAAAGAGCTCTTTAAAGGGCATACAAATTTAATTTTGGGATTCAATGCCTTCCTACCAAAGGAATATAAAATCACTCTTCCATTTCAGCTTCATGGTCATGATGAGACAGGAAAAAAAGTGAAGGACGCGATAGTTATTGATGATCGTGGTTCGTCGTTTCCGAAACGAAATATTGGTTATTCTAGTAGATTCAAACAGCAGCCCTACGCTAGATAG 912 0.3662 MSLGKYELIYEWFQFQITTPKPDRPGSITSCSIINNLEGANSVHCLFAVTRPIHLVFTSASHRIRNQSSSSLTGHKHLILGINNNLMPREYEIDIRPLMDDRRRQDIAAFIIQVKVAFKDNKEKYSEFEQVMKDYKDHKTGTLSVVQMGNKLFKGHTDLHLEFTNLMPDEYQIRLPLYHDHKQGHQLVIKDAFLNQVKLVFQNNMEIYFDFLQIINDHKVQGIDIRGVAAIVKELFKGHTNLILGFNAFLPKEYKITLPFQLHGHDETGKKVKDAIVIDDRGSSFPKRNIGYSSRFKQQPYAR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04539 303 ProSiteProfiles PAH domain profile. 175 253 IPR003822 GO:0006355
Trre9g04539 303 PANTHER SIN3B-RELATED 192 258 IPR039774 GO:0003714
Trre9g04539 303 SUPERFAMILY PAH2 domain 104 169 IPR036600 GO:0006355
Trre9g04539 303 FunFam Paired amphipathic helix protein Sin3 191 251 - -
Trre9g04539 303 SUPERFAMILY PAH2 domain 192 252 IPR036600 GO:0006355
Trre9g04539 303 Pfam Paired amphipathic helix repeat 123 164 IPR003822 GO:0006355
Trre9g04539 303 Pfam Paired amphipathic helix repeat 206 250 IPR003822 GO:0006355
Trre9g04539 303 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Trre9g04539 303 Gene3D Paired amphipathic helix 192 251 IPR036600 GO:0006355
Trre9g04539 303 ProSiteProfiles PAH domain profile. 96 170 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04539 Trre-Chr9 52752669 52756288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04539 193 258 WRKY Transcription Factor Family AT4G12020 51.515 8.15e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre9g04539 PAH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04539 K11644 - cam:101488742 167.162