Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04532 ATGTTTTTCAATTCACTTTTAAAGCTCTCTACCCTCCAAGTTTATGGCATTTTCACTTTTTCTACTTTTGCTTTTGCTGCCACTGCATCTATAGAACATCAAGGTAGTGAAGCAATTGCTCTAATAAATTGGAAAACCAACCTTGATAAACAAAGCCAAGCTTCCTTGTCTTCTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAAGGTATTGTTTGTGATGAAAAAACCAATTATGTGACAATTATAAATGTTGCAAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTTAACTTCTCATCTTTTCCTATGCTTCAAACTTTGGATATAAGTAACAACTTTTTTCATGGTACTATTCCACATCAAATTGGTAACTTGTCCAAAATTTCTAAACTAAAAATGAGTCATAATCTTTTCAATGGTTCCATTCCTCAAGAAATAGGGAAATTGAAAAATCTAAGTCACCTTGATATTGTAAGTTGTAAGCTCATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCTGCTAATTATCTAACCGGCGAAATTCCTTCAATAAAAAACTTGATGAACTTAGAACGGCTTGTTTTATACGGAAACTCTCTTTCTGGACCGATTCCTATGGATTTAGGCACACTATCTTCTCTTAGAACAATTAAATTGTTACGCAACGATTTTTCGGGTGAAATTCCGTCTTCCATAGGAAACTTGAATAATTTGAGGATACTTCAGCTTAGTTCTAATCAACTTCATGGATCAATTCCTTCTACTCTTGGGAACTTGACAAAACTCATTCAGTTATCACTTTCTCACAACCAAATTTCTGAATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAAAACTTAGTCTTTCAGAAAATCATCTTTCTGGTCCTATTCCTTCAACCTTTAGAAATTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAATTAAGTTCAAATCATTTCACTGGCCAATTACCACATCAAATTTGCCTTGGTGGATCACTTAGAAATTTTTCCGCTAATCAGAATCATTTCGGTGGTTCAGTTCCGATAACCTTGAAGAATTGTTCAAGCCTTGTTAGACTTAATCTTGCAGAAAATACGTTGATTGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTAAACTACATTGATTTGAGTCACAACAGGTTTTATGGCAAAATTTTGCCAAGTTGGATAAAAAGTCATAATCTAATTGGCCTAATAATCTCAAATAATGATTTATCAGGTCCTATACCTCCAGAACTAGGACAAGCACCTAAGTTACAATTACTTCGACTCTCTTCAAATCATTTAACAGGAAAAATTCCTAAAGAGCTTTGTAAGTTAACTTCATTGTATGAACTCTCCATGAGTAACAATGAACTTTCTGGCAAAATTCCTATAGAAATAGGATCCATGCAAGGACTTAGAAACTTGAGTCTTGCAGAAAATAATTTAAGTGGCTCAATTCCAAAACAAATTGGAAATCTTGTCAAACTAGTTCATTTGAATTTGAGTAATAATAAGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGATAAGTGGACAAATACCAGAAGCAATTGGAATGTTGCAAAAGTTGAACACATTGAACCTCTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTAAAGATATGATTAGCTTGACAAATGTTAGCATATCTTATAACCAATTAGAGGGTCCAATTCCTAACACAAAAGTGTTTCTTAATGCAACATTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGCAAGTCATCAAAACACAAAAAGTAAACACAAAAGTGTGATATTGACACTCTTTCTATTTCTTATAGTCTTCTTGATTGGTGGTTTTTTGTATATTCATTGGAAAAAAGCAAGAAAAATTAAAAATCAAGCTAGAGAAGAACAAGAACAAAAACAAACTCAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGGGAAGGAGGTTCTGGTTTTGTTTACAAGGCTAATTTACCTTCTGGTCAAGTTGTTGCGGTGAAAAAACTTCATGCTGAAGTTGATAGTGAAATGAACAATTTCAATGCTTTTACTAATGAGGTTAAAGCACTGACGCAGATCAAACATCGTAACATTGTGAAGTTATATGGATTTTGTTCGCATCCGCGGCACTCTTTTGTGGTTTATGAATTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACAATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCGAGCAAAAATGTTCTTTTAGATATGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATATTGATGCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTAATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCAGGTGATCTGATTTCTACATTGTTTTCATCATCTGAAGCACCAAAAGCATATAATTTGCTATTGAAAGATGTATTAGACCAAAGACTTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTAACATTGATTGCAAAAATGGGATTTGCTTGCTTGAGTGAAAATCCACATTCAAGACCAACTATGGAACAAGTTTATAACATGTTTGTGATGCCAAAACCATCATCAATGGAGACATTCCGCGCCGTCACACTTGGTCAACTTTTAAATTAG 3069 0.3382 MFFNSLLKLSTLQVYGIFTFSTFAFAATASIEHQGSEAIALINWKTNLDKQSQASLSSWSIISSPCNWKGIVCDEKTNYVTIINVANFGLKGTLLSLNFSSFPMLQTLDISNNFFHGTIPHQIGNLSKISKLKMSHNLFNGSIPQEIGKLKNLSHLDIVSCKLIGSIPSTIGMLINLVELDLSANYLTGEIPSIKNLMNLERLVLYGNSLSGPIPMDLGTLSSLRTIKLLRNDFSGEIPSSIGNLNNLRILQLSSNQLHGSIPSTLGNLTKLIQLSLSHNQISESIPSSLGNLINLEKLSLSENHLSGPIPSTFRNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNHFTGQLPHQICLGGSLRNFSANQNHFGGSVPITLKNCSSLVRLNLAENTLIGNISDDFGVYPNLNYIDLSHNRFYGKILPSWIKSHNLIGLIISNNDLSGPIPPELGQAPKLQLLRLSSNHLTGKIPKELCKLTSLYELSMSNNELSGKIPIEIGSMQGLRNLSLAENNLSGSIPKQIGNLVKLVHLNLSNNKFMEGIPHEFNRLQSLEDLDLGGNLISGQIPEAIGMLQKLNTLNLSHNNLSGNIPSNFKDMISLTNVSISYNQLEGPIPNTKVFLNATFEALRNNKGLCGNSSSLVPCVASHQNTKSKHKSVILTLFLFLIVFLIGGFLYIHWKKARKIKNQAREEQEQKQTQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGFVYKANLPSGQVVAVKKLHAEVDSEMNNFNAFTNEVKALTQIKHRNIVKLYGFCSHPRHSFVVYEFLEGGSLDNVMRLDTQATMFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDMDCEAYISDFGTAKILNIDAHNSTTFAGTYGYAAPELAYTNEVNEKCDVFSFGVLCLEIIIGKHPGDLISTLFSSSEAPKAYNLLLKDVLDQRLPLPENSVAKDVTLIAKMGFACLSENPHSRPTMEQVYNMFVMPKPSSMETFRAVTLGQLLN 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04532 1022 PANTHER LEUCINE RICH REPEAT KINASE 2 290 1007 - -
Trre9g04532 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 341 656 - -
Trre9g04532 1022 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 337 - -
Trre9g04532 1022 FunFam Leucine-rich repeat receptor protein kinase MSP1 694 809 - -
Trre9g04532 1022 Pfam Protein kinase domain 733 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04532 1022 ProSitePatterns Protein kinases ATP-binding region signature. 737 760 IPR017441 GO:0005524
Trre9g04532 1022 SUPERFAMILY Protein kinase-like (PK-like) 708 1001 IPR011009 -
Trre9g04532 1022 SMART LRR_typ_2 269 292 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 293 316 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 533 556 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 341 365 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 245 268 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 102 126 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 485 509 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 581 604 IPR003591 -
Trre9g04532 1022 SMART LRR_typ_2 557 580 IPR003591 -
Trre9g04532 1022 SMART LRR_sd22_2 269 288 - -
Trre9g04532 1022 SMART LRR_sd22_2 557 572 - -
Trre9g04532 1022 SMART LRR_sd22_2 174 199 - -
Trre9g04532 1022 SMART LRR_sd22_2 533 552 - -
Trre9g04532 1022 SMART LRR_sd22_2 293 319 - -
Trre9g04532 1022 ProSitePatterns Tyrosine protein kinases specific active-site signature. 855 867 IPR008266 GO:0004672|GO:0006468
Trre9g04532 1022 ProSiteProfiles Protein kinase domain profile. 731 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04532 1022 Gene3D Ribonuclease Inhibitor 338 654 IPR032675 -
Trre9g04532 1022 Gene3D Phosphorylase Kinase; domain 1 690 809 - -
Trre9g04532 1022 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Trre9g04532 1022 SUPERFAMILY L domain-like 387 644 - -
Trre9g04532 1022 Gene3D Transferase(Phosphotransferase) domain 1 810 1012 - -
Trre9g04532 1022 FunFam Nuclear pore complex protein NUP107 34 193 - -
Trre9g04532 1022 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Trre9g04532 1022 FunFam MDIS1-interacting receptor like kinase 2 810 1007 - -
Trre9g04532 1022 Gene3D Ribonuclease Inhibitor 255 330 IPR032675 -
Trre9g04532 1022 Gene3D Ribonuclease Inhibitor 193 254 IPR032675 -
Trre9g04532 1022 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Trre9g04532 1022 Pfam Leucine rich repeat 247 306 IPR001611 GO:0005515
Trre9g04532 1022 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Trre9g04532 1022 SUPERFAMILY RNI-like 83 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04532 Trre-Chr9 52665731 52669311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04532 24 903 Receptor kinase-like Gene Family AT4G08850 43.961 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04532 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04532 - - gmx:100800924 1299.65