Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04531 ATGTCCACTTTTAAAGCTTTTATTCTGCCTTTTCATTTTATTCTCATCATGTTTTTCAATTCACTTTTAAAGCTCTCTACCCTCCAAGTTTATGGCATTTTCACTTTTTCTACTTTTGCTTTTGCTGCCACTGCATCTATAGAACATCAAGGTAGTGAAGCAATTGCTCTAATAAATTGGAAAACCAACCTTGATAAACAAAGCCAAGCTTCCTTGTCTTCTTGGTCCATCATTTCAAGTCCTTGCAATTGGAAAGGTATTGTTTGTGATGAAAAAACCAATTATGTGACAATTATAAATGTTGCAAACTTTGGTCTTAAAGGTACTCTTTTAAGTCTTAACTTCTCATCTTTTCCTATGCTTCAAACTTTGGATATAAGTAACAACTTTTTTCATGGTACTATTCCACATCAAATTGGTAACTTGTCCAAAATTTCTAAACTAAAAATGAGTCATAATCTTTTCAATGGTTCCATTCCTCAAGAAATAGGGAAATTGAAAAATCTAAGTCACCTTGATATTGTAAGTTGTAAGCTCATTGGTTCCATTCCCTCAACAATTGGAATGTTGATAAATCTTGTTGAACTTGATTTATCTGCTAATTATCTAACCGGCGAAATTCCTTCAATAAAAAACTTGATGAACTTAGAACGGCTTGTTTTATACGGAAACTCTCTTTCTGGACCGATTCCTATGGATTTAGGCACACTATCTTCTCTTAGAACAATTAAATTGTTACGCAACGATTTTTCGGGTGAAATTCCGTCTTCCATAGGAAACTTGAATAATTTGAGGATACTTCAGCTTAGTTCTAATCAACTTCATGGATCAATTCCTTCTACTCTTGGGAACTTGACAAAACTCATTCAGTTATCACTTTCTCACAACCAAATTTCTGAATCAATTCCATCTTCATTAGGAAACTTGATCAATCTAGAAAAACTTAGTCTTTCAGAAAATCATCTTTCTGGTCCTATTCCTTCAACCTTTAGAAATTTGACCAAACTAACCTTTCTATTACTTCACATGAACAAACTTAATGGTAGCATTTCACAAGCAATGAAAAACATTACCAATTTGAAAAGCTTACAATTAAGTTCAAATCATTTCACTGGCCAATTACCACATCAAATTTGCCTTGGTGGATCACTTAGAAATTTTTCCGCTAATCAGAATCATTTCGGTGGTTCAGTTCCGATAACCTTGAAGAATTGTTCAAGCCTTGTTAGACTTAATCTTGCAGAAAATACGTTGATTGGAAATATTTCAGATGATTTTGGTGTATATCCAAATTTAAACTACATTGATTTGAGTCACAACAGGTTTTATGGCAAAATTTTGCCAAGTTGGATAAAAAGTCATAATCTAATTGGCCTAATAATCTCAAATAATGATTTATCAGGTCCTATACCTCCAGAACTAGGACAAGCACCTAAGTTACAATTACTTCGACTCTCTTCAAATCATTTAACAGGAAAAATTCCTAAAGAGCTTTGTAAGTTAACTTCATTGTATGAACTCTCCATGAGTAACAATGAACTTTCTGGCAAAATTCCTATAGAAATAGGATCCATGCAAGGACTTAGAAACTTGAGTCTTGCAGAAAATAATTTAAGTGGCTCAATTCCAAAACAAATTGGAAATCTTGTCAAACTAGTTCATTTGAATTTGAGTAATAATAAGTTCATGGAAGGAATTCCACATGAATTTAACAGATTGCAATCTCTTGAAGATCTTGATCTTGGTGGAAATTTGATAAGTGGACAAATACCAGAAGCAATTGGAATGTTGCAAAAGTTGAACACATTGAACCTCTCTCACAATAATCTCTCTGGAAATATTCCATCTAATTTTAAAGATATGATTAGCTTGACAAATGTTAGCATATCTTATAACCAATTAGAGGGTCCAATTCCTAACACAAAAGTGTTTCTTAATGCAACATTTGAAGCATTGAGAAACAATAAAGGCTTGTGTGGTAATTCTTCAAGCTTGGTTCCTTGTGTGGCAAGTCATCAAAACACAAAAAGTAAACACAAAAGTGTGATATTGACACTCTTTCTATTTCTTATAGTCTTCTTGATTGGTGGTTTTTTGTATATTCATTGGAAAAAAGCAAGAAAAATTAAAAATCAAGCTAGAGAAGAACAAGAACAAAAACAAACTCAAGATGTTTTTTCCATATGGAGTTATGATGGAAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGAGAAATATCTCATTGGGGAAGGAGGTTCTGGTTTTGTTTACAAGGCTAATTTACCTTCTGGTCAAGTTGTTGCGGTGAAAAAACTTCATGCTGAAGTTGATAGTGAAATGAACAATTTCAATGCTTTTACTAATGAGGTTAAAGCACTGACGCAGATCAAACATCGTAACATTGTGAAGTTATATGGATTTTGTTCGCATCCGCGGCACTCTTTTGTGGTTTATGAATTCTTAGAAGGAGGGAGTTTGGATAATGTGATGAGACTTGATACACAAGCAACAATGTTTGATTGGAAAAAGAGAGTGAATGTTGTTAAGGGTGTGACAAATGCTCTTTACCATATGCATCATGGTTGCTCTCCTCCTATTGTTCATCGTGACATATCGAGCAAAAATGTTCTTTTAGATATGGATTGTGAAGCTTACATCTCAGACTTTGGAACTGCTAAGATTCTTAATATTGATGCACATAATTCAACAACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCATATACTAATGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTATGTTTGGAAATAATTATAGGAAAGCATCCAGGTGATCTGATTTCTACATTGTTTTCATCATCTGAAGCACCAAAAGCATATAATTTGCTATTGAAAGATGTATTAGACCAAAGACTTCCTCTTCCAGAAAATTCAGTTGCTAAGGATGTAACATTGATTGCAAAAATGGGATTTGCTTGCTTGAGTGAAAATCCACATTCAAGACCAACTATGGAACAAGTTTATAACATGTTTGTGATGCCAAAACCATCATCAATGGAGACATTCCGCGCCGTCACACTTGGTCAACTTTTAAATTAG 3117 0.3375 MSTFKAFILPFHFILIMFFNSLLKLSTLQVYGIFTFSTFAFAATASIEHQGSEAIALINWKTNLDKQSQASLSSWSIISSPCNWKGIVCDEKTNYVTIINVANFGLKGTLLSLNFSSFPMLQTLDISNNFFHGTIPHQIGNLSKISKLKMSHNLFNGSIPQEIGKLKNLSHLDIVSCKLIGSIPSTIGMLINLVELDLSANYLTGEIPSIKNLMNLERLVLYGNSLSGPIPMDLGTLSSLRTIKLLRNDFSGEIPSSIGNLNNLRILQLSSNQLHGSIPSTLGNLTKLIQLSLSHNQISESIPSSLGNLINLEKLSLSENHLSGPIPSTFRNLTKLTFLLLHMNKLNGSISQAMKNITNLKSLQLSSNHFTGQLPHQICLGGSLRNFSANQNHFGGSVPITLKNCSSLVRLNLAENTLIGNISDDFGVYPNLNYIDLSHNRFYGKILPSWIKSHNLIGLIISNNDLSGPIPPELGQAPKLQLLRLSSNHLTGKIPKELCKLTSLYELSMSNNELSGKIPIEIGSMQGLRNLSLAENNLSGSIPKQIGNLVKLVHLNLSNNKFMEGIPHEFNRLQSLEDLDLGGNLISGQIPEAIGMLQKLNTLNLSHNNLSGNIPSNFKDMISLTNVSISYNQLEGPIPNTKVFLNATFEALRNNKGLCGNSSSLVPCVASHQNTKSKHKSVILTLFLFLIVFLIGGFLYIHWKKARKIKNQAREEQEQKQTQDVFSIWSYDGKMVYENIIEATEDFDEKYLIGEGGSGFVYKANLPSGQVVAVKKLHAEVDSEMNNFNAFTNEVKALTQIKHRNIVKLYGFCSHPRHSFVVYEFLEGGSLDNVMRLDTQATMFDWKKRVNVVKGVTNALYHMHHGCSPPIVHRDISSKNVLLDMDCEAYISDFGTAKILNIDAHNSTTFAGTYGYAAPELAYTNEVNEKCDVFSFGVLCLEIIIGKHPGDLISTLFSSSEAPKAYNLLLKDVLDQRLPLPENSVAKDVTLIAKMGFACLSENPHSRPTMEQVYNMFVMPKPSSMETFRAVTLGQLLN 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04531 1038 Gene3D Phosphorylase Kinase; domain 1 706 825 - -
Trre9g04531 1038 Gene3D Transferase(Phosphotransferase) domain 1 826 1028 - -
Trre9g04531 1038 Pfam Leucine rich repeat 121 179 IPR001611 GO:0005515
Trre9g04531 1038 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Trre9g04531 1038 SUPERFAMILY Protein kinase-like (PK-like) 724 1017 IPR011009 -
Trre9g04531 1038 Pfam Leucine rich repeat N-terminal domain 52 90 IPR013210 -
Trre9g04531 1038 Pfam Protein kinase domain 749 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04531 1038 ProSitePatterns Tyrosine protein kinases specific active-site signature. 871 883 IPR008266 GO:0004672|GO:0006468
Trre9g04531 1038 SMART LRR_typ_2 501 525 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 261 284 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 573 596 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 597 620 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 118 142 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 285 308 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 357 381 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 309 332 IPR003591 -
Trre9g04531 1038 SMART LRR_typ_2 549 572 IPR003591 -
Trre9g04531 1038 FunFam Nuclear pore complex protein NUP107 50 209 - -
Trre9g04531 1038 FunFam Leucine-rich repeat receptor protein kinase MSP1 710 825 - -
Trre9g04531 1038 Gene3D Ribonuclease Inhibitor 50 253 IPR032675 -
Trre9g04531 1038 ProSiteProfiles Protein kinase domain profile. 747 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04531 1038 FunFam MDIS1-interacting receptor like kinase 2 826 1023 - -
Trre9g04531 1038 SMART LRR_sd22_2 549 568 - -
Trre9g04531 1038 SMART LRR_sd22_2 573 588 - -
Trre9g04531 1038 SMART LRR_sd22_2 309 335 - -
Trre9g04531 1038 SMART LRR_sd22_2 190 215 - -
Trre9g04531 1038 SMART LRR_sd22_2 285 304 - -
Trre9g04531 1038 Gene3D Ribonuclease Inhibitor 254 355 IPR032675 -
Trre9g04531 1038 ProSiteProfiles Leucine-rich repeat profile. 192 214 IPR001611 GO:0005515
Trre9g04531 1038 Gene3D Ribonuclease Inhibitor 356 670 IPR032675 -
Trre9g04531 1038 SUPERFAMILY RNI-like 99 450 - -
Trre9g04531 1038 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 357 672 - -
Trre9g04531 1038 ProSitePatterns Protein kinases ATP-binding region signature. 753 776 IPR017441 GO:0005524
Trre9g04531 1038 FunFam Leucine-rich repeat receptor protein kinase EMS1 254 353 - -
Trre9g04531 1038 PANTHER LEUCINE RICH REPEAT KINASE 2 306 1023 - -
Trre9g04531 1038 SUPERFAMILY L domain-like 383 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04531 Trre-Chr9 52665683 52669311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04531 40 919 Receptor kinase-like Gene Family AT4G08850 44.348 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04531 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04531 - - gmx:100800924 1301.96