Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04513 ATGCAACATCAAGTAGCATCAGAAGTTCAACATACCCAATTGAAGAAAAAGAACCAAGAAACACAGATGTGTAGGAAAATCAAACTCAGTATATCTGATCATAACAACAACCTCAAAAACACCACAACCGTTGATGATGATGATGATGTTTGTGACAAAATAGACGGCGAGGATCTCTTCATTCCACCTCTCAATTTTGCTATGGTTGATAATGGCATTTTCCGTTCTGGTTTTCCTGAACCTTCCAACTTCTCTTTCCTTCAAACCCTTGGCCTTCGCTCCATCATATATTTGTGCCCTGAACCATATCCTGAAGCTAACATGGAGTTTCTCAAGTCAAATGGGATCAAGCTTTATCACTTTGGAATTGAGGGTCATAAGGAGCCGTTTGTAAACATTCCAGAAGACACAATCCGCGAGGCGCTAAAAGTTCTTCTTGATGTAAGGAACCATCCAGTTATAATTCACTGTAAGCGAGGAAAGCACCGAACAGGTTGTTTAGTCGGATGCTATAGAAAACTGCAAAAATGGTGCTTGTCATCTGTTTTCGATGAGTACCAGCGCTTTGCAGCTGCAAAAGCTCGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCTTGAAGCATTTGCCTATACCTTTTTCATATTTGAAAAGGTAA 669 0.3991 MQHQVASEVQHTQLKKKNQETQMCRKIKLSISDHNNNLKNTTTVDDDDDVCDKIDGEDLFIPPLNFAMVDNGIFRSGFPEPSNFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYHFGIEGHKEPFVNIPEDTIREALKVLLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSYLKR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04513 222 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 61 207 IPR029021 -
Trre9g04513 222 PANTHER TYROSINE-PROTEIN PHOSPHATASE 37 211 - -
Trre9g04513 222 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 219 IPR020422 GO:0006470|GO:0008138
Trre9g04513 222 FunFam probable tyrosine-protein phosphatase At1g05000 59 209 - -
Trre9g04513 222 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Trre9g04513 222 PRINTS Plant and fungal dual specificity phosphatase signature 133 147 IPR020428 GO:0016791
Trre9g04513 222 PRINTS Plant and fungal dual specificity phosphatase signature 116 130 IPR020428 GO:0016791
Trre9g04513 222 PRINTS Plant and fungal dual specificity phosphatase signature 60 77 IPR020428 GO:0016791
Trre9g04513 222 PRINTS Plant and fungal dual specificity phosphatase signature 97 110 IPR020428 GO:0016791
Trre9g04513 222 CDD PFA-DSP_Siw14 59 206 - -
Trre9g04513 222 Pfam Tyrosine phosphatase family 61 212 IPR004861 -
Trre9g04513 222 ProSitePatterns Tyrosine specific protein phosphatases active site. 155 165 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04513 Trre-Chr9 52525753 52528681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04513 43 222 Protein tyrosine phosphatase (PTP) family AT4G03960 72.778 3.55e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04513 K18045 - gmx:100814279 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04513 9 52525753 52528681 Trre9g04513 9 52525753 52528681 ECH