Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04510 ATGGCTCGAATGAGGACAACACCACGACTGTCACGATCAGCACTACCAAAATTAACGTTACGAGCTCCGGTTCCCCCTATGCAAAACCAAATTTGTAGCGCACAAAGTCCGGTGAAACAAAACCACTACCGCGGTGTTCGAAGGTGTCGATGGGGCCGATATGCTGCAGAAATCAGAGACCCATTGAAGAAGAAAAATATTTGGTTAGGGACTTTTAACACTGCTGAAGAAGCTGCCCGTGCATTTGACAAAAAAGCAATTGTATTCCATGGGGAAAAGGCTAAAACTAATTTCCCAATCTCCGAATACATCCTTGATGATGCTCAGATTCCTGCTGTTGCTCATCCTGCTCATATTACTCAATCTACTACTCCTCTGGTTAACAACTGCGAGACTAGTGATTGTCATTCGTCATGTTGTTAG 423 0.4421 MARMRTTPRLSRSALPKLTLRAPVPPMQNQICSAQSPVKQNHYRGVRRCRWGRYAAEIRDPLKKKNIWLGTFNTAEEAARAFDKKAIVFHGEKAKTNFPISEYILDDAQIPAVAHPAHITQSTTPLVNNCETSDCHSSCC 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04510 140 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 Pfam AP2 domain 42 84 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 Gene3D AP2/ERF domain 41 101 IPR036955 GO:0003700|GO:0006355
Trre9g04510 140 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Trre9g04510 140 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre9g04510 140 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 34 117 - -
Trre9g04510 140 FunFam Ethylene-responsive transcription factor 2 41 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04510 Trre-Chr9 52476998 52477420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04510 39 103 AP2-EREBP Transcription Factor Family AT1G03800 69.231 6.04e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g04510 AP2 2.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04510 K09286 - tpra:123904184 115.546