Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04509 ATGCCAGAAAATAGGCAGGTTTTGAAGAATGCTGCTTCTAATCCATCTGGTGATAACATTGAAGAAGCAATTCGGCGTTTAAAAATCAATAATAATCGGGACAGAGATGCTGCGGCTCAATCTATGCCTTATCCGGATCGACCTGGTGAACCGGATTGCTTATATTATTTGAGGACTGGAATGTGTGGTTACGGGAGTAACTGTCGCTATAATCACCCTGCTAACGTTTCACTTGTTACTCCATATGGTGAAGAACTTCCTGAGAGAGTCGGGCAACCTGATTGTGAGTACTTTCTTAAGACAGGAACATGCAAGTACGGATCAACATGTAAATATCATCATCCTAAGGACAGGCGAGGTGCTGCACCCGTAGTATTCAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCGTGTCCTTATTACATGAGAACCGGTTCTTGTAAGTTTGGAGTTGCATGCAAGTTCCATCATCCACAACAGCAGGCTTCCTTTGGAACTTATCCGGTGGCTGCGTCCCCTCCATCAACAACTGTTACTTCATCCGGTTTTCCATATGCTGGCGGGTTTCCTGCATGGTCAGTGCCGAGAATGTCGTATTTATCTGGACAGGCCATTCAATCTTATGTTCCTCCTTTTATGCCTTCTTCACAAGGCATTATGCCTGCACTGAGCTGGAGCAACTACATGGGAAGTATTAGCCCCGCAATGCCTTCTGGTTTTATTGGATCTAATCTTGTCTACGACTACATGAATCCGAATCCGGCGGTGGGAGAGACACTTTCTGGTGGACAGGTAATGAATTCAACTCTTCCAGATAGACCTGATCAACCAGACTGTAAATACTTTATGAGTACCGGAACATGCAAATATGGTTCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGCCCAAACTTTATCGGTTAATCCACTTGGCCTTCCTATGAGACCTGGTAATGCTATATGCTCTTATTACAGAATCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCACTTGTAGCAGCCATCCCTCAAAACTACGGCTTGCCTTCGCCTACTCTATCGGTATTCGACCCATCTCTCCTTACCAGTCCAAGAAGGCTTTCGACCGTCCAACCAAGCGAGACATCTCCATCAAAACAATCAACTGACAAACTTCAGCAATCTGATACAAAAGCTGCTACTGAAGATTCATCTAAACAAGCTGACGACACTACATCAAATTCTCGCACACCTTCGTCCGAGTCTTTGCACAAATGA 1281 0.4418 MPENRQVLKNAASNPSGDNIEEAIRRLKINNNRDRDAAAQSMPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHPANVSLVTPYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGTYPVAASPPSTTVTSSGFPYAGGFPAWSVPRMSYLSGQAIQSYVPPFMPSSQGIMPALSWSNYMGSISPAMPSGFIGSNLVYDYMNPNPAVGETLSGGQVMNSTLPDRPDQPDCKYFMSTGTCKYGSDCKFHHPKERIAQTLSVNPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPLVAAIPQNYGLPSPTLSVFDPSLLTSPRRLSTVQPSETSPSKQSTDKLQQSDTKAATEDSSKQADDTTSNSRTPSSESLHK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04509 426 PANTHER PROTEIN PHOSPHATASE RELATED 22 380 - -
Trre9g04509 426 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Trre9g04509 426 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Trre9g04509 426 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Trre9g04509 426 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Trre9g04509 426 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Trre9g04509 426 MobiDBLite consensus disorder prediction 1 20 - -
Trre9g04509 426 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Trre9g04509 426 Gene3D - 120 168 - -
Trre9g04509 426 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Trre9g04509 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Trre9g04509 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872
Trre9g04509 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Trre9g04509 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Trre9g04509 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 345 IPR000571 GO:0046872
Trre9g04509 426 SUPERFAMILY CCCH zinc finger 320 345 IPR036855 GO:0046872
Trre9g04509 426 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Trre9g04509 426 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Trre9g04509 426 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Trre9g04509 426 MobiDBLite consensus disorder prediction 373 426 - -
Trre9g04509 426 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Trre9g04509 426 Gene3D - 46 119 - -
Trre9g04509 426 Gene3D - 273 354 - -
Trre9g04509 426 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Trre9g04509 426 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Trre9g04509 426 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04509 Trre-Chr9 52460968 52464684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04509 1 411 C3H Transcription Factor Family AT1G04990 44.604 2.62e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre9g04509 zf-CCCH 1.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04509 - - vra:106765262 686.797