Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g04506 | ATGGTTCGAGCGAGGACTACTCCACACCCGAGGTCACCATTAGTTTTGCCAAAACTAACAGTACGAAAACCGATTTCCCCTCAGCAAAACAACATTTGCACTGAACAGAGTCAAGCGAAGGAAATCCACTATCGCGGTGTTCGAAAGCGACCACGAGGTCGATACGCTGCAGAAATCCGAGACCCGTTTAAAAGAAAACGTCTATGGTTAGGAACTTATAAAACTGCTGCTGAAGCTGTCCGTGCTTATGATCAGAAAGCGATTGTATTTCGTGGAGAAATGGCTAAAACTAATTTCCCAATCTCTGAATACATATTTAATGATGGTCAGATTCCTCCTGCTGCTCCTCCTGTTCAGATTCCTCAATCTACTGCTCCTCTGGCGAACGATTATTTTTTTTTTGGTAACGGCATGGCTCGCCAAAGGTTAATCAGAGAACCGAGACTGGTGCTCCGAGAACCTGTTCCTCCTTCGCTGCCGAACGAAAATCAAATTCCGGCTGAGAATGAGATTCTCACTCCGCCGAACGAATTTCCTGTTGAGGATGCAGAAATCCGCTACCGCGGCGTTCGGAAGCGGCCATGGGGAAGATATGCAGCGGAGATCAGAGATCCCTCCAAAAAAGCGCGTGTCTGGTTGGGAACATTTGACACCGCTCTAGACGCGGCCAGAGCTTACGACGAAAAAGCGATTCTCTTCCGCGGTGCCAAAGCAAAGACGAATTTTCCCATTCCAGACCATATCCTGGCTGGTGGTGGTGATATGATTGCTGTTGCTATTCCTCCTATTCGTGCTGCTGCTCGTAGTAATAAAATCGAGTTGAATTTTGGGCCTGTTCCGGTGAACAGGCCCACTTCGAGCAGTATGAGCAGTACAGTTGAGTCATTTAGCGGACCGAGGACAGTTGTTGTTGGCTCTTCGTCAACAACAGCTGTTTCTAGGGTTCCTGTTGCTCCTGAGGATTTTCACAGTGATTGTGATTCGTCTTCATCTGTTGTTGATGATGATGAAGAAGATTGTGTTGTTGTTGCTTCTTCATCTTCATCGGTCAAGAAGCCACTAGCAATCGATCTCAATTTGCCTCCTCCGATGAATTCTGATGCGGAGGATGAAGAGATCCGTGCTACTGCCTTGCATCTTTGA | 1143 | 0.4724 | MVRARTTPHPRSPLVLPKLTVRKPISPQQNNICTEQSQAKEIHYRGVRKRPRGRYAAEIRDPFKRKRLWLGTYKTAAEAVRAYDQKAIVFRGEMAKTNFPISEYIFNDGQIPPAAPPVQIPQSTAPLANDYFFFGNGMARQRLIREPRLVLREPVPPSLPNENQIPAENEILTPPNEFPVEDAEIRYRGVRKRPWGRYAAEIRDPSKKARVWLGTFDTALDAARAYDEKAILFRGAKAKTNFPIPDHILAGGGDMIAVAIPPIRAAARSNKIELNFGPVPVNRPTSSSMSSTVESFSGPRTVVVGSSSTTAVSRVPVAPEDFHSDCDSSSSVVDDDEEDCVVVASSSSSVKKPLAIDLNLPPPMNSDAEDEEIRATALHL | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g04506 | 380 | ProSiteProfiles | AP2/ERF domain profile. | 186 | 243 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | SMART | rav1_2 | 186 | 249 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | SMART | rav1_2 | 43 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | Pfam | AP2 domain | 186 | 229 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | Pfam | AP2 domain | 43 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | FunFam | Ethylene-responsive transcription factor 2 | 186 | 244 | - | - | |
Trre9g04506 | 380 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 169 | 344 | - | - | |
Trre9g04506 | 380 | SUPERFAMILY | DNA-binding domain | 43 | 102 | IPR016177 | GO:0003677 | |
Trre9g04506 | 380 | SUPERFAMILY | DNA-binding domain | 186 | 244 | IPR016177 | GO:0003677 | |
Trre9g04506 | 380 | CDD | AP2 | 43 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | PRINTS | Ethylene responsive element binding protein signature | 209 | 225 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | PRINTS | Ethylene responsive element binding protein signature | 187 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | CDD | AP2 | 186 | 244 | IPR001471 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | FunFam | Ethylene-responsive transcription factor 2 | 43 | 102 | - | - | |
Trre9g04506 | 380 | Gene3D | AP2/ERF domain | 43 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
Trre9g04506 | 380 | Gene3D | AP2/ERF domain | 185 | 244 | IPR036955 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g04506 | Trre-Chr9 | 52439681 | 52444779 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g04506 | 184 | 320 | AP2-EREBP Transcription Factor Family | AT1G50640 | 54.483 | 5.59e-31 | 116 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Trre9g04506 | AP2 | 1.5e-11 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g04506 | K09286 | - | tpra:123904184 | 168.703 |