Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04506 ATGGTTCGAGCGAGGACTACTCCACACCCGAGGTCACCATTAGTTTTGCCAAAACTAACAGTACGAAAACCGATTTCCCCTCAGCAAAACAACATTTGCACTGAACAGAGTCAAGCGAAGGAAATCCACTATCGCGGTGTTCGAAAGCGACCACGAGGTCGATACGCTGCAGAAATCCGAGACCCGTTTAAAAGAAAACGTCTATGGTTAGGAACTTATAAAACTGCTGCTGAAGCTGTCCGTGCTTATGATCAGAAAGCGATTGTATTTCGTGGAGAAATGGCTAAAACTAATTTCCCAATCTCTGAATACATATTTAATGATGGTCAGATTCCTCCTGCTGCTCCTCCTGTTCAGATTCCTCAATCTACTGCTCCTCTGGCGAACGATTATTTTTTTTTTGGTAACGGCATGGCTCGCCAAAGGTTAATCAGAGAACCGAGACTGGTGCTCCGAGAACCTGTTCCTCCTTCGCTGCCGAACGAAAATCAAATTCCGGCTGAGAATGAGATTCTCACTCCGCCGAACGAATTTCCTGTTGAGGATGCAGAAATCCGCTACCGCGGCGTTCGGAAGCGGCCATGGGGAAGATATGCAGCGGAGATCAGAGATCCCTCCAAAAAAGCGCGTGTCTGGTTGGGAACATTTGACACCGCTCTAGACGCGGCCAGAGCTTACGACGAAAAAGCGATTCTCTTCCGCGGTGCCAAAGCAAAGACGAATTTTCCCATTCCAGACCATATCCTGGCTGGTGGTGGTGATATGATTGCTGTTGCTATTCCTCCTATTCGTGCTGCTGCTCGTAGTAATAAAATCGAGTTGAATTTTGGGCCTGTTCCGGTGAACAGGCCCACTTCGAGCAGTATGAGCAGTACAGTTGAGTCATTTAGCGGACCGAGGACAGTTGTTGTTGGCTCTTCGTCAACAACAGCTGTTTCTAGGGTTCCTGTTGCTCCTGAGGATTTTCACAGTGATTGTGATTCGTCTTCATCTGTTGTTGATGATGATGAAGAAGATTGTGTTGTTGTTGCTTCTTCATCTTCATCGGTCAAGAAGCCACTAGCAATCGATCTCAATTTGCCTCCTCCGATGAATTCTGATGCGGAGGATGAAGAGATCCGTGCTACTGCCTTGCATCTTTGA 1143 0.4724 MVRARTTPHPRSPLVLPKLTVRKPISPQQNNICTEQSQAKEIHYRGVRKRPRGRYAAEIRDPFKRKRLWLGTYKTAAEAVRAYDQKAIVFRGEMAKTNFPISEYIFNDGQIPPAAPPVQIPQSTAPLANDYFFFGNGMARQRLIREPRLVLREPVPPSLPNENQIPAENEILTPPNEFPVEDAEIRYRGVRKRPWGRYAAEIRDPSKKARVWLGTFDTALDAARAYDEKAILFRGAKAKTNFPIPDHILAGGGDMIAVAIPPIRAAARSNKIELNFGPVPVNRPTSSSMSSTVESFSGPRTVVVGSSSTTAVSRVPVAPEDFHSDCDSSSSVVDDDEEDCVVVASSSSSVKKPLAIDLNLPPPMNSDAEDEEIRATALHL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04506 380 ProSiteProfiles AP2/ERF domain profile. 186 243 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 SMART rav1_2 186 249 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 Pfam AP2 domain 186 229 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 Pfam AP2 domain 43 88 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 FunFam Ethylene-responsive transcription factor 2 186 244 - -
Trre9g04506 380 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 169 344 - -
Trre9g04506 380 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Trre9g04506 380 SUPERFAMILY DNA-binding domain 186 244 IPR016177 GO:0003677
Trre9g04506 380 CDD AP2 43 102 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 PRINTS Ethylene responsive element binding protein signature 209 225 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 CDD AP2 186 244 IPR001471 GO:0003700|GO:0006355
Trre9g04506 380 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Trre9g04506 380 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Trre9g04506 380 Gene3D AP2/ERF domain 185 244 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04506 Trre-Chr9 52439681 52444779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04506 184 320 AP2-EREBP Transcription Factor Family AT1G50640 54.483 5.59e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre9g04506 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04506 K09286 - tpra:123904184 168.703