Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04496 ATGGGAACTCTTTCACTTCACACCAACCTAAACCTCTTCTTTCTCTTCCACCCCCTTTCCACACACCAAAACCCTAATTTCTCACACCAAAACCCCAATTTCTCACCTTCTCCTACTCATTCCCTTTCTCTCAAATCTCATATCTTCCACTGCTCAAAATACACCCACATTACCGCTCTTTCTCCATCAAAACCAATTCGCATCAAAAGCGCAACAAAAATCGAAGCACAACGTGCGTTAATGGATTACCTTCTCTACACTCGAAATTACCCTTTCACAGACGCAGAATTCATCGCAAAAAACTCTCCACATTTCATTGATTCTCTTATCTCCAAGATCGACATTCAAGACTGGGACGTTTTTCGCTCTATCAGTAGGTATCTTATGTATAACCCGATTAACGAATTTGAACCCTTTTTAGAGAGTATAGGTATCAAACAAAAAGAATTGCAATTATTTCTGCCTAAAGGCTTGTTTTTCCTTAGTGATAATAGTGTTTTGGTTGATAATTTTCATGTCTTGTATAATCACGGTGTTCCGAGGAATAGAATATGTAAAATTTATAAAGAAGCAAGAGAGGTTTTTCAGTATGGTAGTGGTGTTTTGGCAAAGAAATTCGAAGATTATGAAAATTTGGGTTTGAGTAAATCTTCATTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGAATTTGTTGTTGTTCTTGATTGGTTGAAAAAAATTGGGATTGAGATTGAATGGATTGCGCGTTGTATGTCTTGTTCAAGAACGTTTAGTTGGAAAAGAATGATTGATACTATAAAGTTTGTTCATCAAGTTGGATATTCTGAGAAACAAATGTATGATTTGTTTAAAGCGGACCCTAGATTGTTGTTAGAAGGTTCAGGGAAGAAGATGGACTTGCTTTTAGGTTGGTTGATTAAGTCTGGTGTTGATGTGAATGTGGTTAGTTCTTGTTTCGTAGAGCATCCCGATATGTTGTCAAGTAAGTGTGTGCAAAATTTGACGTCTGTGATTTATTTTTTGTATAATATTCAAATGGAACTAGATGATATTAAACATGTTTTGACTAACTACATGCATATCCTGAGCAAATATTCGATAAAGGGTTATAGAACGGTTTGTAAGGAGTTAGGAGTTGGAAAAGCTGATTTATGCCGAATCATAAAGGATGATCCCTTAGAACTTATTAGTTTGGCTTCAAAATCGGAACAGATGAAGGCTGGAAGGGAACACTTTTGTGACCCACGTAATTATTTGGATAAAACAAATTTCTTGCTGAAAATGAACTATATTGAGAATTCTGAGGAGATGGAAGAAGCAATGAAGATGTTTAAAGGGAGAGGTGATCAGTTACAAGAGAGATTTGATTGCCTGGTAGAAGCTGGTTTGGATTATAACACTGTGGTTAGAATGATAAGGCGAGATCCTAGGATTCTAAACCTGAAGAGAACTGTTATTGAAAAGAAGGTTGATTTCATAAAAAACGCTTCAGATTTCCCTTTAGAATGTCTTGTGGGATTCCCCGATTACTTTTCTCATGATTTGGGCATAATTAGTGCAAGAATTTCAATGTATCAGTGGTTAAAGAAGAGGAATGCAATTACTCCCGCTAAATCCTTGTGTACCATAATTACATATAATGAAAAGCGGGGAGGGGGTTTTGAAAGAAGGAAGTCAATGTCGACTGTTTTCCAAACTATGCTAATCAACAGAATTCTTGGAAGCAACTCAGAAACTTGGGCTCACATATCCATGCCATTTTTCTTGACATGGCCGATGTGTGTGCACTTAGACATACAAATTTACTGA 1833 0.3655 MGTLSLHTNLNLFFLFHPLSTHQNPNFSHQNPNFSPSPTHSLSLKSHIFHCSKYTHITALSPSKPIRIKSATKIEAQRALMDYLLYTRNYPFTDAEFIAKNSPHFIDSLISKIDIQDWDVFRSISRYLMYNPINEFEPFLESIGIKQKELQLFLPKGLFFLSDNSVLVDNFHVLYNHGVPRNRICKIYKEAREVFQYGSGVLAKKFEDYENLGLSKSSFIKLVVCCPLLLVGDVDSEFVVVLDWLKKIGIEIEWIARCMSCSRTFSWKRMIDTIKFVHQVGYSEKQMYDLFKADPRLLLEGSGKKMDLLLGWLIKSGVDVNVVSSCFVEHPDMLSSKCVQNLTSVIYFLYNIQMELDDIKHVLTNYMHILSKYSIKGYRTVCKELGVGKADLCRIIKDDPLELISLASKSEQMKAGREHFCDPRNYLDKTNFLLKMNYIENSEEMEEAMKMFKGRGDQLQERFDCLVEAGLDYNTVVRMIRRDPRILNLKRTVIEKKVDFIKNASDFPLECLVGFPDYFSHDLGIISARISMYQWLKKRNAITPAKSLCTIITYNEKRGGGFERRKSMSTVFQTMLINRILGSNSETWAHISMPFFLTWPMCVHLDIQIY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04496 610 Gene3D Transcription termination factor 3, mitochondrial 116 258 IPR038538 -
Trre9g04496 610 Gene3D Transcription termination factor 3, mitochondrial 304 558 IPR038538 -
Trre9g04496 610 PANTHER CGI-12 PROTEIN-RELATED 275 557 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 Pfam mTERF 457 554 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 Pfam mTERF 133 235 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 Pfam mTERF 275 488 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 SMART mt_12 324 355 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 SMART mt_12 185 215 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 SMART mt_12 477 508 IPR003690 GO:0003690|GO:0006355
Trre9g04496 610 SMART mt_12 220 251 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04496 Trre-Chr9 52369939 52373343 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre9g04496 mTERF 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04496 - - psat:127118043 673.7