Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04495 ATGGGATCTCTTTCGCTTCTTCACAATCCAAACCTCTTCTCTCACTTCAAAAACCCCAATTTCTCACACCGAAACCCTAATTTCTCACATTCTTCTTCCATTTCTCTCAAATCTCCAATTCGCATTAACTCCCGCTCAAAATCCACCCACATTCCCGCTCTTTCTTCATCAACTCCAATTCGCATCAAAGGCGCCGCAAAATTCGAAGCACAGCGTGCCCTATTGGATTATCTTCGCTTCACTCGAAATTACACTTTCACAGACGCAGAATTCATCACCATAAACTCTCCACATTTCATCAATCACCTTATCTCCAAGATCAACATTCAAAACGGTGACGTTTTTCGTTCTCTCAAGTGCTATCTTATGTATAACCCTATTAACGAATTTGAACCCTTTTTAGAGAGTTTAGGAATTAATCAAACGGAATTGCAATTATTTCTCCCTAAAGGTTTCATTTTTCTTAGTGATTATAGTCTTTTGCTTGATAATTTTCACGTGTTGTATAATCATGGGGTTCCGAGGAATAGAATAGGTAAAATTTACAAAGAAGCAAGAGAGGTTTTTGGGTATGATAGTGGTGTTTTGGCAAATAAATTCAAAGATTATGAAAATTTGGGTTTGAGTAAATCTTCATTTATCAAGCTTGTTGTTTGTTGTCCATTGCTTTTGGTTGGTGATGTTGATTCTGAATTTGTTGCTGTTCTTGATTGGTTGAAGAAAATTGGGATTGAGAGTGACTGGATTACGCGTTGTATGTCTTGTTCAAGAACGTATAGTTGGAAAAATATGATCGATACAATAGAGTTTGTCCATCAAGTTGGATATTCCGAGAAACAAATGTATGATTTGTTTAAGGGAGAACCTAGATTGTTGTTGGAAGGTTTAGGGAAGAAGTTGTACATGCTTTTAGGTCGGTTGATTAAGTCCGGTGTTGATGTGAATGTGGTTAGTTCTTGTTTCGTAGAGCATCCTGATATGTTGTTAACTAAGCGCGTGAAAAATTTGTTGACCGTGATTGCTTTTTTGTATAATATTCGAATGGTACAAGATGATATCGAGCATGTTTTGACTAACTACATGCATATCCTGAGCAAACATTCCATAAAAGGTCATAGAACGGTTTGTAAGGAGTTACAGGTTGGAAAAGCTGATTTATGTCAAATCATAAAGGATGATCCATTAGAGCTTATTAATTTGGCTTCGAAATCGGAACATAAGAGGGCTGGAAGGGAACTCTCCAGTGACCCTCGTAATTATTTGGATAAAACAATTTTCTTGTTGAAAATGAACTATGTTGAGAATTCTGAGGAGATGGAAGAAGCAACAAAGATGTTTAAGGGGAGAGGTGATCAGTTACAAGATAGATTTGATTGCCTGGTAGAAGCTGGTTTTGATTATAATAGCGTGGTTAGAATGATAAAGCGAGCTCCTCAGATTCTTAACATGAAGAGAACTGTAATTCAAAAGAAGATTAATTTCATAAAAAACACTTCAGTTTTCCCAATAGAATGTCTTGTGAGATACCCAAGATACTTTTACCATGATTTGGACAAAATTAGTGCAAGATTTTCAATGTATCAGTGGTTGAAGAAGAGCAATGCAATAAATCCTGCGCTATCCTTGTGTACCATACTTTCAATTCATGAAAAACGATTCGTAAAATACATAGTGAATATACATCCTGAAGGTCCAACAATCTGGCAACGTATCAAAAGTTTATCAAACAAAGATAAGAATTAA 1743 0.3609 MGSLSLLHNPNLFSHFKNPNFSHRNPNFSHSSSISLKSPIRINSRSKSTHIPALSSSTPIRIKGAAKFEAQRALLDYLRFTRNYTFTDAEFITINSPHFINHLISKINIQNGDVFRSLKCYLMYNPINEFEPFLESLGINQTELQLFLPKGFIFLSDYSLLLDNFHVLYNHGVPRNRIGKIYKEAREVFGYDSGVLANKFKDYENLGLSKSSFIKLVVCCPLLLVGDVDSEFVAVLDWLKKIGIESDWITRCMSCSRTYSWKNMIDTIEFVHQVGYSEKQMYDLFKGEPRLLLEGLGKKLYMLLGRLIKSGVDVNVVSSCFVEHPDMLLTKRVKNLLTVIAFLYNIRMVQDDIEHVLTNYMHILSKHSIKGHRTVCKELQVGKADLCQIIKDDPLELINLASKSEHKRAGRELSSDPRNYLDKTIFLLKMNYVENSEEMEEATKMFKGRGDQLQDRFDCLVEAGFDYNSVVRMIKRAPQILNMKRTVIQKKINFIKNTSVFPIECLVRYPRYFYHDLDKISARFSMYQWLKKSNAINPALSLCTILSIHEKRFVKYIVNIHPEGPTIWQRIKSLSNKDKN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04495 580 Gene3D Transcription termination factor 3, mitochondrial 299 570 IPR038538 -
Trre9g04495 580 Gene3D Transcription termination factor 3, mitochondrial 116 256 IPR038538 -
Trre9g04495 580 PANTHER CGI-12 PROTEIN-RELATED 80 559 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 Pfam mTERF 269 447 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 Pfam mTERF 131 229 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 Pfam mTERF 439 553 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 503 533 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 214 245 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Trre9g04495 580 SMART mt_12 179 209 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04495 Trre-Chr9 52365965 52367707 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre9g04495 mTERF 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04495 - - psat:127118043 715.301