LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g04485	ATGAGGAAAAGAGAAAGGGAAAATCCTTGTGGTGTATGTGGGCACTATCACAAATGTGAAGAAGTTTGTTCAATTTGTGGTCATAGGGTTCCGGTTGGATCGGAGAAAACTTCTATACAAGTTAGTGCTTTTCCTTCTGTGATCTTGCCAGAGTTTCTTTACTTGGGAAGTTATGATAATGCTTCACGCTCTGAACTTCTCAAAACTCAAGGGATTTCACGTATCCTCAATACTGTCCCGTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAATCTTTCCAATTTGACGAAGCAAACCAGTTTCTTGAACAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGCAGGTCCCCAGCTGTTGTAATCGGCTACCTGATGAAGTCCAGAGGATGGAGACTTGCACAGAGTTATCAGTGGGTAAAGGAACGGAGAACTTCCGTTGAATTATCTGAAGGTGCCCTCCAGCAACTACAGGAGTACGAGCAAAAGCTATTCGGATCAATCGGCAACTTGACACTGTCTGCTGGTTTCCCACCTCCACCAGGACCATCTTCAATTAGCTTTGGCTTCCCAAAGACCAACGAACTACCTCAACAACTTCCTTCCTTCTTGAGCACTACAACTCCTTCAATTTTCGCCCGAGCTCCTTCTGACATAGCTCCTTCGGAGTTCACATTCGGAGCTGGTCAGAATGTTACTGGAAATCCTTTCAATACAAATCCATCTAATCCTAATGCCACCGATATTCAAATGGATTGA	801	0.4382	MRKRERENPCGVCGHYHKCEEVCSICGHRVPVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKSFQFDEANQFLEQCEKDKERVLVHCMSGKSRSPAVVIGYLMKSRGWRLAQSYQWVKERRTSVELSEGALQQLQEYEQKLFGSIGNLTLSAGFPPPPGPSSISFGFPKTNELPQQLPSFLSTTTPSIFARAPSDIAPSEFTFGAGQNVTGNPFNTNPSNPNATDIQMD	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g04485	266	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	103	169	IPR000387	GO:0016311\|GO:0016791
	Trre9g04485	266	SMART	dsp_5	44	177	IPR020422	GO:0006470\|GO:0008138
	Trre9g04485	266	FunFam	Protein-tyrosine-phosphatase IBR5	34	184	-	-
	Trre9g04485	266	ProSitePatterns	Tyrosine specific protein phosphatases active site.	122	132	IPR016130	GO:0016311\|GO:0016791
	Trre9g04485	266	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	45	179	IPR029021	-
	Trre9g04485	266	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	1	266	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Trre9g04485	266	Gene3D	Protein tyrosine phosphatase superfamily	38	183	IPR029021	-
	Trre9g04485	266	Pfam	Dual specificity phosphatase, catalytic domain	53	177	IPR000340	GO:0008138\|GO:0016311
	Trre9g04485	266	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	44	180	IPR020422	GO:0006470\|GO:0008138
	Trre9g04485	266	MobiDBLite	consensus disorder prediction	247	266	-	-
	Trre9g04485	266	CDD	DSP_plant_IBR5-like	45	174	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g04485	Trre-Chr9	52310735	52314515	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g04485	1	164	Protein tyrosine phosphatase (PTP) family	AT2G04550	73.373	5.81e-91	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g04485	K04459		-	gmx:100806021	433.335