Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04458 ATGTGCAGTAAACATATTTCTTCTGGTGAGCTTCTCATGTGCTGGCTTCACAAGGAATTCTGTGACTATGTTCTTAACCTTTCTGTGAAGTTGCCTGATGGTGGTCTAAAGCCAGACATGGGCCCAAAAATGTATATTGCTTATGGATTTGATCAAGAGCTTGGGTGGTGTGATTCTGTGACTAAGCTCCATTGCAATATGTCTGATGCAGTAAATGTGTTGACACATATTGCAAAAGTGAAATTGAATTCTCGTAATTCATTGTCTTACGGGGATTCTTTAGATGGTGCTCTCTGGGACATATTTCGGAGAGAGGATGTACCTAAATTGGAGGAATATTTGAAGAAGCATTTCAGAGAGTTCAAGCACTTCCATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGCCGTGGACGTTTATTCAGAAGCTCAGAGATGCTGTTTTTATTCCTGCCGGTTGTCCTCACCAAGTCAGGAATCTGAAGTCATGCATCAAAGTCGGGCTTGATTTTGTCTCACCCGATAATGTTGGCGAGTGTTTCCGTTTGACGGAGGAGTTCCGTAAGCTTCCGATAAACCACATGTGTGCCAAGGACAACTTGGAGGTGAAGAAAATGACAATATATGCTATGCTTCATGCAGTTACAAAATTGATGAAAGCAAAGGAAGGATCCAGTGTAAATATTCATCCATAA 762 0.4147 MCSKHISSGELLMCWLHKEFCDYVLNLSVKLPDGGLKPDMGPKMYIAYGFDQELGWCDSVTKLHCNMSDAVNVLTHIAKVKLNSRNSLSYGDSLDGALWDIFRREDVPKLEEYLKKHFREFKHFHCSPLKQVIHPIHDQTFYLTLEHKRKLKEEYGIEPWTFIQKLRDAVFIPAGCPHQVRNLKSCIKVGLDFVSPDNVGECFRLTEEFRKLPINHMCAKDNLEVKKMTIYAMLHAVTKLMKAKEGSSVNIHP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04458 253 ProSiteProfiles JmjC domain profile. 20 210 IPR003347 -
Trre9g04458 253 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 244 IPR045109 GO:0032454|GO:0033169
Trre9g04458 253 SUPERFAMILY Clavaminate synthase-like 17 228 - -
Trre9g04458 253 SMART cupin_9 20 210 IPR003347 -
Trre9g04458 253 Pfam JmjC domain, hydroxylase 97 193 IPR003347 -
Trre9g04458 253 Gene3D Cupin 18 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04458 Trre-Chr9 52127656 52129312 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre9g04458 JmjC 4.1e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04458 K15601 - thj:104802301 314.309