Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04450 ATGAGGGACCTGTGCAAAGAAGGCCAAACCACTTTCAAAGAGGACATAGTTCCAAAGATTGTGAAGGATGGATACCATTGGAGGAAATATGGACAAAAAGTGACTAGAGATAATCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGTTGTCCCGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTTGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCTCCTCAAATGGAGTCAACATCCGGTTCCGGCCGTAGCGTGAGTCTCAATTCGGTACCTACTTCAGCGTCTCTCAGCTCATCGGCGCCAAAAGTTGTTACACTTGACTTGACAAATTCTAAGAGTAGTAATAAAGATTCCAAGAACATTGAACCAAAAAAAGATTCACCTAAAGTACCAAAGAATTTGGTGGATCAAATGGCTACTTCTTTAACAACGGATCCTAATTTTAGAGCAGCACTTGTTGCAGCAATCTCAGGAAGATTGATGCATAATAATTAA 525 0.4057 MRDLCKEGQTTFKEDIVPKIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQMESTSGSGRSVSLNSVPTSASLSSSAPKVVTLDLTNSKSSNKDSKNIEPKKDSPKVPKNLVDQMATSLTTDPNFRAALVAAISGRLMHNN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04450 174 Gene3D WRKY domain 6 83 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g04450 174 ProSiteProfiles WRKY domain profile. 16 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g04450 174 MobiDBLite consensus disorder prediction 69 142 - -
Trre9g04450 174 MobiDBLite consensus disorder prediction 81 126 - -
Trre9g04450 174 SUPERFAMILY WRKY DNA-binding domain 19 82 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g04450 174 MobiDBLite consensus disorder prediction 127 141 - -
Trre9g04450 174 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 20 170 IPR044810 GO:0003700
Trre9g04450 174 Pfam WRKY DNA -binding domain 22 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g04450 174 SMART WRKY_cls 21 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04450 Trre-Chr9 52098984 52103412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04450 20 174 WRKY Transcription Factor Family AT1G80840 59.119 1.79e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g04450 WRKY 9.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04450 - - gmx:100807966 240.35