Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04444 ATGTCCAGAGAAAGGGAGAGATTTTTTGACGAGATAGGAAAGAAGAGAGAAGGAGATGATTCTTTTCAGAAGGGAAAAATGTTAGGTCCTTCTGGAACACTAAATACTACAACTCCTTGTGCTGCATGCAAGCTTTTAAGACGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCTAGCAATGTCTCAAAGTTGCTAATGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGACTAAGAGATCCAGTATATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAATTCAATCATTATTAGGTGAACTTAATGCTATAAGGGAAGAAATACATAAATACAAACTTATGGAAGCTAACATGATTCCTTCTTCAGAGGATGTATCAATTGCTAGTACTCTACCATCTACAACAACACTACCAATGCTTCCTTCTTCCATTTACACACAACAAACAAATCCTACCAATTATAGCTCAATTTCAAGTGATCATATTTCCTATTTTGATTAA 594 0.3687 MSRERERFFDEIGKKREGDDSFQKGKMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNAIREEIHKYKLMEANMIPSSEDVSIASTLPSTTTLPMLPSSIYTQQTNPTNYSSISSDHISYFD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04444 197 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 172 - -
Trre9g04444 197 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g04444 197 Pfam Lateral organ boundaries (LOB) domain 39 135 IPR004883 -
Trre9g04444 197 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Trre9g04444 197 MobiDBLite consensus disorder prediction 1 30 - -
Trre9g04444 197 Coils Coil 118 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04444 Trre-Chr9 52066407 52067913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04444 27 157 AS2 family AT2G40470 79.851 7.62e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g04444 LOB 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04444 - - gmx:100786324 276.944