Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g04444 | ATGTCCAGAGAAAGGGAGAGATTTTTTGACGAGATAGGAAAGAAGAGAGAAGGAGATGATTCTTTTCAGAAGGGAAAAATGTTAGGTCCTTCTGGAACACTAAATACTACAACTCCTTGTGCTGCATGCAAGCTTTTAAGACGAAGGTGTGCTCAAGAATGCCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCTAGCAATGTCTCAAAGTTGCTAATGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGACTAAGAGATCCAGTATATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAATTCAATCATTATTAGGTGAACTTAATGCTATAAGGGAAGAAATACATAAATACAAACTTATGGAAGCTAACATGATTCCTTCTTCAGAGGATGTATCAATTGCTAGTACTCTACCATCTACAACAACACTACCAATGCTTCCTTCTTCCATTTACACACAACAAACAAATCCTACCAATTATAGCTCAATTTCAAGTGATCATATTTCCTATTTTGATTAA | 594 | 0.3687 | MSRERERFFDEIGKKREGDDSFQKGKMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQIQSLLGELNAIREEIHKYKLMEANMIPSSEDVSIASTLPSTTTLPMLPSSIYTQQTNPTNYSSISSDHISYFD | 197 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g04444 | 197 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 35 | 172 | - | - | |
Trre9g04444 | 197 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Trre9g04444 | 197 | Pfam | Lateral organ boundaries (LOB) domain | 39 | 135 | IPR004883 | - | |
Trre9g04444 | 197 | ProSiteProfiles | LOB domain profile. | 38 | 139 | IPR004883 | - | |
Trre9g04444 | 197 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Trre9g04444 | 197 | Coils | Coil | 118 | 145 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g04444 | Trre-Chr9 | 52066407 | 52067913 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g04444 | 27 | 157 | AS2 family | AT2G40470 | 79.851 | 7.62e-69 | 207 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LOB | Trre9g04444 | LOB | 1.2e-39 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g04444 | - | - | gmx:100786324 | 276.944 |