Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04443 ATGAACATAAATTTTCATGGTTTCTTCTTCCTTTTCCTCCTTTCAATCTTTTTCTTTTCCATCTTAGCTTTTGGTGCCACTCTATCCAAAGATGAAGTGGAAGCTCTTAAAGATATAGCTAAGACACTTGGGAAGAATGATTGGGATTTCAGTGTAGATCCATGTAGTGGAGAAAGAAATTGGACATCTATTATTCAAGTGAAAGGGAGTGAAAATGCTGTCACATGCAATTGTACATATGTCAATGCTACTGTTTGTCACGTGACTCACATAATTTTGAAAATACAAAATCTCCCGGGCACTCTCCCAAAGGAATTGGTCAGGCTACCTTTTCTTCAAGAATTTGATGTTTCCCGCAATTACTTGAATGGTACAATTCCTGAAGAATGGGGCTCCACGAATCTTGTTAACATCTCCCTCCTTGGAAATCGATTAACTGGTCCAATACCAATAGCTTTAACAAACATATCATCTCTCCAAAGTTTGGTATTGGAGTCCAATCAATTTTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTATCCCAACTTCAAAGACTGTTAATTCCTTCCAACAATTTCACCGGAGAACTACCTGCAACATTGGCCAAACTCACCACATTACAAGATTTTCGAATTCAAGATAATCAGTTCTCTGGGAAGATACCTGATTATATTCAAAACTGGACAAATCTCACAAAATTAGTTATTCAAGGGACTGGATTAAGTGGGCCAATTCCTTCTGGAATTTCAGTTTTGAAAAAATTAACTGACTTGAGAATCAGTGATTTAATTGGATCAGAACAGTCACCTTTTCCTCAACTTAGTGATATGAATTTTAAAACATTGATTCTAAGGAGCTGCAACATCAATGGAACACTGCCTGATTATCTTGGGGCAATGACTAGTCTAAAAAACTTAGATCTTAGCTTTAACAAATTGAGTGGACCAATTCCAAATGACTATGAATCTCTAAAAAAAGTGGACTACATCTATTTAACTGGAAACCTTCTCACTGGACAAGTTCCTTCATGGGCACAAAAGGCTGATAACTTAGACATTTCATACAATAACTTCACTTTAAGCCAAGGGAGTCAATGTCAAGATGCAAATGCGAACTTGTTTTCTACCTCTTCGACCCGTAATGACTCAGGAATAGCTTCATGTTTGTCAAGCGTTGTTTGTCCTAAAACTTCATCATATGCTCTTCATATAAACTGTGGTGGAGGGTTGGTTACAGTCAATCGAAGCGCATATGACGATGATAGAGAAACAGCAGGACCAGCTACATTCCACCAGAGTGGGGGGAAAAATTGGGCATTTAGCACCACCGGTAACTTCATGGATATCGACGGCTCCGACAGATATACCTGGTTCGGTAGATCTAATCCTGAACTATTCAAGGACGCGAGAATTTCTCCTACATCTTTGACTTATTATGCATTTTGCATGGGAAATGGAAACTACACAGTAAATCTACATTTTGCGGAAATTGTGTTCACTGATGATCAAACATATGGAAGCCTAGGAAGACGTATATTCGATATCTATATTCAGGGAGAGTTAGTACAAAAAGACTTCAATATTGCAAAAGAAGCCGGAGGAATTGGTATGCCGGTCACAAAACCATTCACTGCTGTTGTGAGTCATAATACCTTGGAGATTCGCTTATATTGGGCCGGAAAAGGGACAATTAGTTTACCAGAAAGAGGAGTATATGGTCCTCTTATATCAGCTATAACTGTTAAACCAGATTTTACCCCTCCTTCTGTAAGTGGAAGTAGCAGCATATCTGCCGGAGCTGTGGTTGGAATTGTGGCTGCAGTAGCAATTGTTATCATCCTATTATTTTTTATACTTTGGTGGAAAGGCTGTTTTGGAAAGAAAAGCTCTTTAGAAAGAGAGGTAAAGGGTTTAGACCTACAAATGAGTTTATTTAATGTAAGACAAATCAAAGGAGCAACAAATAACTTTGATATTGCCAATAAGATTGGAGAAGGAGGGTTCGGTCCGGTATACAAGGGGTGTCTATCAGATGGTACATTGGTAGCAGTCAAGCAACTTTCTGCTAAATCAAAGCAAGGGAATCGCGAGTTTTTAAATGAAATTGGCATGATTTCGGCATTGAACCATCCACATCTTGTTAAACTCTATGGATGTTGTGTGGAAGGAGATCAGTTAATGTTAATATATGAATATTTGGAAAATAATAGTCTTGCTCGCGCTTTATTTGGGGCTCCAGAACACCAAATAAAATTGGATTGGCCAACAAGATACAAGATTTGTATTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGGGACATCAAGGCAACTAATGTGTTGCTTGATAAAGATCTCAATCCAAAGATATCTGATTTTGGTTTAGCCAAACTCGATGAAGAGGAGAACACTCACATTAGCACTCGAATAGCCGGGACATACGGATATATGGCTCCAGAATATGCTATGCATGGTTATTTGACCGACAAAGCAGATGTATATAGTTTTGGAATTGTTGTCTTGGAAATCTTACATGGTACTAACAATACCATTTTTCGACAAAAAGGCTCGGAAGCATTCCATCTTCTTGATTGGGCACATGTGTTGAAAGAGGAAAATAATCAAATGGAACTAGTTGATAAAAGATTAGGTTCAAATTTCAACAAAGAAGAAGCAATGGTGATGGTAAATGTAGCACTCTTATGCACTAATGTAACTTCAGCACTTAGGCCTGCAATGTCTTCAGTGGTAAGCATGTTAGAGGGTAAAATTGGTATTCAAGAATTGGAATTAGAGTCAAGTGAAGTGTTGGATGAAAAGAAAATGGATGCAATGAGACAATATTATAATGATCATAGTATATCAATGGAAGAAGGACCATGGACTGCTACATCTTCTTCAGTAGCAACTGATCTTTATCCTGTACACCTAGATTCTTCTTACTTGGAGAAAAGAGTTTAA 2988 0.3792 MNINFHGFFFLFLLSIFFFSILAFGATLSKDEVEALKDIAKTLGKNDWDFSVDPCSGERNWTSIIQVKGSENAVTCNCTYVNATVCHVTHIILKIQNLPGTLPKELVRLPFLQEFDVSRNYLNGTIPEEWGSTNLVNISLLGNRLTGPIPIALTNISSLQSLVLESNQFSGNLPPELGNLSQLQRLLIPSNNFTGELPATLAKLTTLQDFRIQDNQFSGKIPDYIQNWTNLTKLVIQGTGLSGPIPSGISVLKKLTDLRISDLIGSEQSPFPQLSDMNFKTLILRSCNINGTLPDYLGAMTSLKNLDLSFNKLSGPIPNDYESLKKVDYIYLTGNLLTGQVPSWAQKADNLDISYNNFTLSQGSQCQDANANLFSTSSTRNDSGIASCLSSVVCPKTSSYALHINCGGGLVTVNRSAYDDDRETAGPATFHQSGGKNWAFSTTGNFMDIDGSDRYTWFGRSNPELFKDARISPTSLTYYAFCMGNGNYTVNLHFAEIVFTDDQTYGSLGRRIFDIYIQGELVQKDFNIAKEAGGIGMPVTKPFTAVVSHNTLEIRLYWAGKGTISLPERGVYGPLISAITVKPDFTPPSVSGSSSISAGAVVGIVAAVAIVIILLFFILWWKGCFGKKSSLEREVKGLDLQMSLFNVRQIKGATNNFDIANKIGEGGFGPVYKGCLSDGTLVAVKQLSAKSKQGNREFLNEIGMISALNHPHLVKLYGCCVEGDQLMLIYEYLENNSLARALFGAPEHQIKLDWPTRYKICIGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVVLEILHGTNNTIFRQKGSEAFHLLDWAHVLKEENNQMELVDKRLGSNFNKEEAMVMVNVALLCTNVTSALRPAMSSVVSMLEGKIGIQELELESSEVLDEKKMDAMRQYYNDHSISMEEGPWTATSSSVATDLYPVHLDSSYLEKRV 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04443 995 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 941 - -
Trre9g04443 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Trre9g04443 995 Gene3D Ribonuclease Inhibitor 29 275 IPR032675 -
Trre9g04443 995 Gene3D Transferase(Phosphotransferase) domain 1 733 944 - -
Trre9g04443 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 584 - -
Trre9g04443 995 SUPERFAMILY L domain-like 84 359 - -
Trre9g04443 995 Gene3D - 397 583 - -
Trre9g04443 995 ProSiteProfiles Protein kinase domain profile. 657 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04443 995 FunFam Leucine-rich repeat transmembrane protein kinase 200 401 - -
Trre9g04443 995 Gene3D Ribonuclease Inhibitor 276 375 IPR032675 -
Trre9g04443 995 SUPERFAMILY Protein kinase-like (PK-like) 641 933 IPR011009 -
Trre9g04443 995 Pfam Malectin domain 401 579 IPR021720 -
Trre9g04443 995 Pfam Protein tyrosine and serine/threonine kinase 659 927 IPR001245 GO:0004672|GO:0006468
Trre9g04443 995 Gene3D Phosphorylase Kinase; domain 1 625 732 - -
Trre9g04443 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 32 191 - -
Trre9g04443 995 CDD STKc_IRAK 663 931 - -
Trre9g04443 995 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Trre9g04443 995 Pfam Leucine rich repeat 280 337 IPR001611 GO:0005515
Trre9g04443 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 957 - -
Trre9g04443 995 SMART serkin_6 657 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04443 Trre-Chr9 52046291 52055194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04443 22 958 Receptor kinase-like Gene Family AT1G53420 56.080 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g04443 PK_Tyr_Ser-Thr 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04443 - - gmx:732563 1440.63