Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04439 ATGGTTTCTAGGGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACTTCTTCGTTCTGTTACTAATTCTCATGCTCTAAACGATACCTCGATCGTGATCGATGCATCAAAGTATATCGAAAATCTAAAGGAAAAGGTTGAAAGACTGAATGAAGAAATAGCATCTGCAGAAAGTTCAAGTGTTCATAACCCCTTGCCTAAGGTTACGGTGGAAACCCTAGAAAAGGGATTTCTTATAAACGTTTTTTCATCAAAAAGTAGCCAAGGTATGCTTGTTTCAATACTTGAAGCCATTGAAGAGATGAGACTTACGGTGCTTGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTCCAAGCTGTTGGAGAAGAGAATGAAGAACAAGGTGAGACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCAATAAAAAATTGGAGTGAAAGTACCGATCAAGTGTAA 471 0.397 MVSREQKRAALHEKLQLLRSVTNSHALNDTSIVIDASKYIENLKEKVERLNEEIASAESSSVHNPLPKVTVETLEKGFLINVFSSKSSQGMLVSILEAIEEMRLTVLEARVSCTDTFRFQAVGEENEEQGETIDAQAVKQAVGQAIKNWSESTDQV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04439 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Trre9g04439 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04439 Trre-Chr9 52020422 52024243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04439 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.861 1.76e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04439 - - tpra:123919440 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01792 13 15053587 15057106 Trre9g04439 9 52020422 52024243 ECH
Trre5g00879 5 5967372 5968912 Trre9g04439 9 52020422 52024243 ECH
Trre9g04439 9 52020422 52024243 Trre9g04439 9 52020422 52024243 ECH