Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04426 ATGGAATCTGTTCGATGCTTCGTTTTACACATTTCCCTCTTTCTTTTGGTGGCAGCTAGTGCCAATGTGAACTATGTTAGTGGAGGTATGCCACCGAATGTAATCGTGGCGAAAGATGGCAGTGGCCAATATACGACGGTCACTGCCGGAATCAATTCATATCCGGCAAATCACAAAGGCCGATATGTTATCTATGTGAAAGCTGGCATCTACAGCGAGTACATAACTGTTGATGATAAAAAACCTAACATTATCTTGTATGGTGATGGTCCTACCAACACCATCATCACTGGAAGCAAAAACAGCACTCAAGGACTCCACATGCCGGACACGGCCACATTCACCACCTTAGCTCCAAATTTTACTGCCAAGTCAATTAGTTTTGAGAACACAGCTGGTGCAATAGGTATGCAAGCGGTAGCAATCAGAGTTGGAGGTGATAAATCAGCATTTTTTGACTGTGCATTTTACGGTCATCAAGATACACTATATGTAGACCAGGGATTACAGTTCTACCGCGACTGTGTGATTTCCGGAACAATTGACTTCATATATGGTCATTCCAGTACCTTAATCCAGAATTCTAAGATTTTGTTGAGAAAGCCCCTTCTTGATGGACAAAGCAATGTTGTCGTGGCAGATGCAACTTCTAAATACAGCAGGTTCAGAACTGGTATAGTCCTGCAAAACTATGATGACCTCAAGCCTTATCTGCACCTCGTAAAGACTTACTTAGCAAGACCGTGGGATAAATTTTCCACAGCCGTCTTCCTTGAAAACTATATTGCGGATTTTGTTGATAGAGAAGGATATATGATTTGGTCAAAAGATAAACCAAACATTGAACACCCTTACTTTGCTGAGTTTGGCAACACTGGACCTGGTGCCAATGCTACGGCAAGAGTCTACTGGGCTAAGGGTCTTATCACCAAGAAGGCGGCTTCTTTATTCACAGCCGAGCGGTTCATTAAAGCAAGCACTTGGTTGCCCGCAACCGGAATTCCCTATGATAAAGGATTGGCATAA 1026 0.4308 MESVRCFVLHISLFLLVAASANVNYVSGGMPPNVIVAKDGSGQYTTVTAGINSYPANHKGRYVIYVKAGIYSEYITVDDKKPNIILYGDGPTNTIITGSKNSTQGLHMPDTATFTTLAPNFTAKSISFENTAGAIGMQAVAIRVGGDKSAFFDCAFYGHQDTLYVDQGLQFYRDCVISGTIDFIYGHSSTLIQNSKILLRKPLLDGQSNVVVADATSKYSRFRTGIVLQNYDDLKPYLHLVKTYLARPWDKFSTAVFLENYIADFVDREGYMIWSKDKPNIEHPYFAEFGNTGPGANATARVYWAKGLITKKAASLFTAERFIKASTWLPATGIPYDKGLA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04426 341 FunFam Pectinesterase 4 30 340 - -
Trre9g04426 341 SUPERFAMILY Pectin lyase-like 30 338 IPR011050 -
Trre9g04426 341 Gene3D - 28 340 IPR012334 -
Trre9g04426 341 PANTHER PECTINESTERASE 32 330 - -
Trre9g04426 341 Pfam Pectinesterase 33 325 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04426 Trre-Chr9 51911201 51915174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04426 29 340 Carbohydrate Esterase AT2G26450 42.320 1.27e-80 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04426 K01051 - gmx:100808559 377.481