Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04425 ATGGAATCACTACGACGTAAAGTACTTCCTCCAGGGGCATTGAAGGCCAAACTGTTTTCTTCCAAAAGAAAATGTGTTAAGAAGAGAAAAATTGTTTCATTCAATGTGGTTGCCAAAAAGATTACAAAGTTTGAAGAAGAAGAACGGGTTAATGATCATAAAGGTTTTCCATTTGAGCAAACTCGTAATAGTACTTTTATCGATGATCGTGAAGTGAAAAAGACTTTGTCGAATCGGAAAGAATTGAAAATACAACGTGAAAGTGAAGAAAAAGCTGCTCAACTCAAACAAATAAAGATATTATGCGAAAGGGAAGCTGCTCGACGCAAAATTGAGCAAATAAAAAACACCGCTCGCTTGAGTGAAAACATGGATTCTATGCATGCTATTGCCAAGTTCATTGGATATTCTTTCAATGTGGTTGCCGAAAAGATTACAAAGTTCGAAGAAGAAGAAGAACGAGTTAATGATCATAAAAGTATTCCATTAGAGCAAACTCGTAATACTACTTTTATCGATGATCTTGAAGTGAAAAAAACTTTGTCGAATTGGAAACAATTGAAGATACAACGCGAAAGTGAAGAAGAAGCTACCCAACTCAAACAAATGAAGAGACTACATGAAAGAGAAGCTGCTCGACTTAAAATTGAGCAAATAAAAAACACCGCTCGTTTGAGTGAAAATATGGATTCTATAAGAACATCACTCTCAAACTCACAAGGAATCTTCTCTTCATTCTCTTCTCAACCAAGAACACTTAGAAGAACATCACTCTCAAATTCACAAGGAATCTTTTTCTACATTTTCGAACAATTAAGCCCAAGCTTCAGGATGGAATCTGTTCGATGCTTCGTTTTACACATTTCCCTCTTTCTTTTGGTGGCAGCTAGTGCCAATGTGAACTATGTTAGTGGAGGTATGCCACCGAATGTAATCGTGGCGAAAGATGGCAGTGGCCAATATACGACGGTCACTGCCGGAATCAATTCATATCCGGCAAATCACAAAGGCCGATATGTTATCTATGTGAAAGCTGGCATCTACAGCGAGTACATAACTGTTGATGATAAAAAACCTAACATTATCTTGTATGGTGATGGTCCTACCAACACCATCATCACTGGAAGCAAAAACAGCACTCAAGGACTCCACATGCCGGACACGGCCACATTCACCACCTTAGCTCCAAATTTTACTGCCAAGTCAATTAGTTTTGAGAACACAGCTGGTGCAATAGGTATGCAAGCGGTAGCAATCAGAGTTGGAGGTGATAAATCAGCATTTTTTGACTGTGCATTTTACGGTCATCAAGATACACTATATGTAGACCAGGGATTACAGTTCTACCGCGACTGTGTGATTTCCGGAACAATTGACTTCATATATGGTCATTCCAGTACCTTAATCCAGAATTCTAAGATTTTGTTGAGAAAGCCCCTTCTTGATGGACAAAGCAATGTTGTCGTGGCAGATGCAACTTCTAAATACAGCAGGTTCAGAACTGATGATGACCTCAAGCCTTATCTGCACCTCGTAAAGACTTACTTAGCAAGACCGTGGGATAAATTTTCCACAGCCGTCTTCCTTGAAAACTATATTGCGGATTTTGTTGATAGAGAAGGATATATGATTTGGTCAAAAGATAAACCAAACATTGAACACCCTTACTTTGCTGAGTTTGGCAACACTGGACCTGGTGCCAATGCTACGGCAAGAGTCTACTGGGCTAAGGGTCTTATCACCAAGAAGGCGGCTTCTTTATTCACAGCCGAGCGGTTCATTAAAGCAAGCACTTGGTTGCCCGCAACCGGAATTCCCTATGATAAAGGATTGGCATAA 1839 0.397 MESLRRKVLPPGALKAKLFSSKRKCVKKRKIVSFNVVAKKITKFEEEERVNDHKGFPFEQTRNSTFIDDREVKKTLSNRKELKIQRESEEKAAQLKQIKILCEREAARRKIEQIKNTARLSENMDSMHAIAKFIGYSFNVVAEKITKFEEEEERVNDHKSIPLEQTRNTTFIDDLEVKKTLSNWKQLKIQRESEEEATQLKQMKRLHEREAARLKIEQIKNTARLSENMDSIRTSLSNSQGIFSSFSSQPRTLRRTSLSNSQGIFFYIFEQLSPSFRMESVRCFVLHISLFLLVAASANVNYVSGGMPPNVIVAKDGSGQYTTVTAGINSYPANHKGRYVIYVKAGIYSEYITVDDKKPNIILYGDGPTNTIITGSKNSTQGLHMPDTATFTTLAPNFTAKSISFENTAGAIGMQAVAIRVGGDKSAFFDCAFYGHQDTLYVDQGLQFYRDCVISGTIDFIYGHSSTLIQNSKILLRKPLLDGQSNVVVADATSKYSRFRTDDDLKPYLHLVKTYLARPWDKFSTAVFLENYIADFVDREGYMIWSKDKPNIEHPYFAEFGNTGPGANATARVYWAKGLITKKAASLFTAERFIKASTWLPATGIPYDKGLA 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04425 612 Coils Coil 190 217 - -
Trre9g04425 612 Coils Coil 72 92 - -
Trre9g04425 612 Coils Coil 104 124 - -
Trre9g04425 612 SUPERFAMILY Pectin lyase-like 307 609 IPR011050 -
Trre9g04425 612 FunFam Pectinesterase 4 307 611 - -
Trre9g04425 612 Gene3D - 305 611 IPR012334 -
Trre9g04425 612 PANTHER PECTINESTERASE 103 601 - -
Trre9g04425 612 Pfam Pectinesterase 310 596 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04425 Trre-Chr9 51911201 51922572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04425 259 611 Carbohydrate Esterase AT2G26450 38.172 4.21e-77 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04425 K01051 - gmx:100808559 369.007