Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04413 ATGAAACCAGTTTTGTGTGAAGAGCGTTGGGATGGAGTTGTTGTAACACAATCAAATTTCTTAGCACTTCAAGCTTTCAAAGAAGAGTTAATTGATCCAAAAGGGTACCTAAAAACATGGAATGATAGTGGCTTTGGAGCTTGTTCTGGTGCTTGGGCTGGAATTAAATGTGCTCAAGGACAAGTTATTGTAATTCAGCTTCCATGGAAAGGATTAAAGGGTAAAATCACTGAGAGAATTGGTCAACTTGAAGGTCTTAGAAAGCTAAGTCTTCATAATAATCAAATTAGTGGTTCAATCCCTTCATCATTAGGACTTTTAATCAATCTTAGAGGAGTTCAACTCTTCAATAATAGGTTAACAGGTTCAATCCCTCCTTCATTAGGTTATTGTCCTATGCTTCAATCTTTAGATTTTAGTAACAATTTGCTCACAGGTATAATCCCTGAGAGTCTTGGAAATGCCACTAAGCTTTATTGGCTTAACTTGAGTTTCAATTCATTGTCTGGTTCAATACCAACTAGTTTAACTAGCTTGAATTCTCTCACTTTCATATCTCTTCAACACAATAATCTTTCAGGTTCTATTCCTAACTCATGGGGTGGTAGCTTGAAAAATGGATTCTCTAGGCTTCAAAATCTTGTATTGGACCATAATTTCTTGACTGGAACAATTCCTGCTTCTTTAGGTAAATTAAGAGAACTTAGAGAGATTTCTGTTGGTCATAACCAATTTAGTGGTCACATTCCTCAAAGTATTGGAAACATTTCAAATCTTAAACAACTTGATTTTTCATCGAATAATCTCAGTGGAGAAATTCCCATTTCTTTTGATAATCTAGATAGTCTAAATTTCTTCAATGTTTCTCATAATAACCTTTCTGGTCCTGTTCCAACCTTACTAGCACAGAAGTTTAACTCGAGCTCATTTGTCGGAAATATTCAACTATGTGGTTATAGTCCTTCGACTCGATGTCCCTCTTTAGCTCCTTCTGAAGTACCTGCAGCACCTTCTGAAGCACCGAAACACCGCCATCACAAGAAACTAGGTACAAAAGACATAATCCTCATAGTAGCAGGAGTGCTCCTTGTAGTCCTGATAATAGTCTGCTGCATCCTTCTCTTCTGTCTATTCCGAAAAAGAAAAACATCGAATGTCGAGGGTGGACAGGCTACAGCGAGAGCAGCTGCTGCTGGCAGGACAGGAAAAGGAGTCCCTCCTATCAGTGGAGAAGTTGAAGCGGGCAGTGACGCTGGAGGCAAACTGGTCCATTTTGATGGACCATTGGCTTTTACAGCTGACGATCTCCTCTGTGCAACGGCCGAGATAATGGGAAAGAGCACATATGGAACAGTGTATAAGGCAACACTGGAGGATGGTAGTCAAGCTGCCGTGAAACGATTGAGGGAAAAAATCACAAAGAATCATAGAGATTTTGAATCTGAAGTTAATGTTCTAGGGAGAATTAGACATCCAAATCTTTTGGCATTGAGAGCCTATTACTTGGGACCTAAAGGAGAAAAGCTTCTGGTTTTTGATTACATGCCTAAAGGAAGTCTTGCTTCTTTTCTACATGCTCATGGACCTGAAATACGAATTGATTGGCCAATAAGGATGAACATAGCACAGGGCATGGCTCGTGGCTTGTTATACCTACATTCACATGAGAACATTATACATGGGAACCTAACTTCAAGCAATGTATTGCTTGATGAGAACACAAATGCAAAAATAGCAGACTTTGGTCTATCAAGGTTGATGACAACTGCGGCTAACTCAAATGTGATTGCTACTGCCGGAGCATTAGGATACCGAGCTCCCGAGCTATCGAAGCTGAAGAAAGCAAACACAAAAACTGATGTATACAGTCTTGGTGTAATCTTGTTAGAACTCCTAACAAGGAAGCCACCTGGTGAGGCAATGAATGGTGTTGATTTACCTCAGTGGGTTGCCTCTATTGTTAAAGAGGAGTGGACAAATGAGGTTTTCGATGTCGATTTGATGAGAGATCCATCAACAAATGGTGATGAATTGTTGAACACTTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGGCCAGAAGTTCAGCTGATACTTCAGCAGCTAGAAGAGATTAGACCACAGATATCATCAGCCATTTCTAGTGATGAAGGAGCTATCCCTTCCACAAGTGAATAA 2190 0.4 MKPVLCEERWDGVVVTQSNFLALQAFKEELIDPKGYLKTWNDSGFGACSGAWAGIKCAQGQVIVIQLPWKGLKGKITERIGQLEGLRKLSLHNNQISGSIPSSLGLLINLRGVQLFNNRLTGSIPPSLGYCPMLQSLDFSNNLLTGIIPESLGNATKLYWLNLSFNSLSGSIPTSLTSLNSLTFISLQHNNLSGSIPNSWGGSLKNGFSRLQNLVLDHNFLTGTIPASLGKLRELREISVGHNQFSGHIPQSIGNISNLKQLDFSSNNLSGEIPISFDNLDSLNFFNVSHNNLSGPVPTLLAQKFNSSSFVGNIQLCGYSPSTRCPSLAPSEVPAAPSEAPKHRHHKKLGTKDIILIVAGVLLVVLIIVCCILLFCLFRKRKTSNVEGGQATARAAAAGRTGKGVPPISGEVEAGSDAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKNHRDFESEVNVLGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHAHGPEIRIDWPIRMNIAQGMARGLLYLHSHENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTRKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVDLMRDPSTNGDELLNTLKLALHCVDPSPSARPEVQLILQQLEEIRPQISSAISSDEGAIPSTSE 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04413 729 Gene3D Transferase(Phosphotransferase) domain 1 516 723 - -
Trre9g04413 729 Gene3D Phosphorylase Kinase; domain 1 444 515 - -
Trre9g04413 729 FunFam Leucine-rich repeat receptor-like protein kinase 423 514 - -
Trre9g04413 729 Gene3D Ribonuclease Inhibitor 132 204 IPR032675 -
Trre9g04413 729 Gene3D Ribonuclease Inhibitor 19 131 IPR032675 -
Trre9g04413 729 FunFam Leucine-rich repeat receptor-like kinase 18 128 - -
Trre9g04413 729 FunFam Leucine-rich repeat receptor protein kinase EMS1 129 204 - -
Trre9g04413 729 Gene3D Ribonuclease Inhibitor 205 327 IPR032675 -
Trre9g04413 729 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 205 325 - -
Trre9g04413 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 148 709 - -
Trre9g04413 729 Pfam Protein tyrosine and serine/threonine kinase 441 706 IPR001245 GO:0004672|GO:0006468
Trre9g04413 729 ProSiteProfiles Leucine-rich repeat profile. 85 107 IPR001611 GO:0005515
Trre9g04413 729 SUPERFAMILY Protein kinase-like (PK-like) 442 711 IPR011009 -
Trre9g04413 729 SUPERFAMILY L domain-like 18 317 - -
Trre9g04413 729 Pfam Leucine rich repeat 134 192 IPR001611 GO:0005515
Trre9g04413 729 Pfam Leucine rich repeat 233 293 IPR001611 GO:0005515
Trre9g04413 729 ProSiteProfiles Protein kinase domain profile. 438 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04413 729 Pfam Leucine rich repeat N-terminal domain 21 57 IPR013210 -
Trre9g04413 729 FunFam Os07g0541700 protein 515 601 - -
Trre9g04413 729 CDD STKc_IRAK 444 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04413 Trre-Chr9 51842062 51844347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04413 10 711 Receptor kinase-like Gene Family AT3G51740 57.935 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g04413 PK_Tyr_Ser-Thr 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04413 - - gmx:100811174 1027.7