Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04409 ATGTGGAGATTAAAGCCTTGGAAAGCCATTAGAGAAAGTTATCATGGTCACTTTAGGAAATGCGGTCTCTTAATTTTGTGTGTTAAGCATGCAAAGGTGAATGACTTCCTTACTCATGCATTTGTATTTGATTTTGGAAGTATAGGCTTCATTGGTCTTTCAACTCATCACCATTGTTTGAAGGTTTTTCATGGGCAACCCATGCATACTAATGTTCCTGCTGCTCCACATCCTCCAGCCATGCCTGAGAGATTACGCAGAGAAAGAATAGCAGAAAGAATAAGGGCGCTGCAAGATTTGGTTCCAAGTGTCAACAAGGTCATGTAG 327 0.4098 MWRLKPWKAIRESYHGHFRKCGLLILCVKHAKVNDFLTHAFVFDFGSIGFIGLSTHHHCLKVFHGQPMHTNVPAAPHPPAMPERLRRERIAERIRALQDLVPSVNKVM 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04409 108 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 108 IPR011598 GO:0046983
Trre9g04409 108 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04409 Trre-Chr9 51805658 51807315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04409 75 107 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.636 4.51e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04409 - - aip:107647796 63.929