Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04407 ATGGCTCGGGAAGCTATCAAGATTCAAGTTACCTCAGCAAATTTTGTAAATTGGGGCACTGTTAATATATTTGAAAAAATGGGTGCTTCTGCTTATGATCAGAGTTATGATGTTAATCTTGCGCCATTGGAGTTGTCTAAGAAGAGGAAAACTAGGAGTAGAGGAAAAGGGAATAAATCTGTGGCTGAGATTCTAGCTAAGTGGAGGGAATACAATGAGCCTCTTTATGCAGGTAAAGAGGATGGTAAACCGAAGCCTAAAGCGCCGGCGATAGGTTCAAAGAAAGGGTGTATGAAAGGGAAAGGAGGACCTCAAAACTCAGAGAATATGTATAGAGGTGTTAGACAGAGGACTTGGGGGAAATGGGTTGGTGAAATTAGGGAACCAAATAGAGGTAGTAGGCTTTGGTTAGGTACTTTTCCTACTGCTCAAGATGCTGCTCTTGCTTATGATTATGCTTCTAGAGCTATGTATGGTCCTTCGGCGCGACTTAATTTCCCGAATGTATCAGATTATAGTTCTATTAAGGAATATTTGAAGGATTCTTCATCAGATGCTACTGATACTGCCACTGCTACTGCTGCTGCTAGCTGTTGTTCTTCTGTGGTGACAACTCCTGCAACATCTGAGACAACAACTTTGTCAAGTCATTCTGAGGTTTGTGCTGTTGAGGATGTTAAGGAGATGTTCAAGATACCTGTTACTATGAACAATACTGTTGATGTTTGTTATGAAGTTTCGTCTCCAACTAGTAGAATTAAGGAAGAGCCAAAGGATGAGTTTGCTGATATCATTGACCCTGGTGGCGGTGAAATCCAAGATGCTAAATTAGAAGGAATACAAAAGCTGAAGGATGAGCTTGCTGATATCATTAACCCTGAAATCCAAGATGCCAAATTAGAAGGAGCACAAAAGCCGATGGATGAGCTTGCTGATATCATTGATCCTGGTGGTGGAGAAATTCAAGATGCCAATTTAGAAGTTACACAAACACAGAAACAGGATGTTGTGCAGGTTGGAGAAGGTGTATGTAATGACCAGATGGATCTTTCATGGATTGATAACTTTGACTGTGACTTTAATTTTGACTTCATTGATGATGATAACATGAAGGGTTATTCAATGGATGAGTTCTTTCAAGTGGAAGAGCTTTTGGGGCAATTAGATAATAATCCAGTTGATGAATCTGGGTTGATGCAAAATTTGGATTGTGGACAAATGAGTTTTCCAGAAGAGAGTAATCCTCAGGTTGGGACTAATTCAAGCTTCTTTTATGAATTGGAAAATCCAGATGCTAAACTGTTGGGGAGTTTGCCTCATATGGAACAAACAGACACAACATCAGGTGTTGATTATGCATTAGATTTCTTTAAAATAGAAGAACCTGTGAACTGTAATGATGCACTTGAAGATACACCATATCTTGATTTGAATTTTGATGATGTGAATTATGATTCAAGAATGTAA 1467 0.3913 MAREAIKIQVTSANFVNWGTVNIFEKMGASAYDQSYDVNLAPLELSKKRKTRSRGKGNKSVAEILAKWREYNEPLYAGKEDGKPKPKAPAIGSKKGCMKGKGGPQNSENMYRGVRQRTWGKWVGEIREPNRGSRLWLGTFPTAQDAALAYDYASRAMYGPSARLNFPNVSDYSSIKEYLKDSSSDATDTATATAAASCCSSVVTTPATSETTTLSSHSEVCAVEDVKEMFKIPVTMNNTVDVCYEVSSPTSRIKEEPKDEFADIIDPGGGEIQDAKLEGIQKLKDELADIINPEIQDAKLEGAQKPMDELADIIDPGGGEIQDANLEVTQTQKQDVVQVGEGVCNDQMDLSWIDNFDCDFNFDFIDDDNMKGYSMDEFFQVEELLGQLDNNPVDESGLMQNLDCGQMSFPEESNPQVGTNSSFFYELENPDAKLLGSLPHMEQTDTTSGVDYALDFFKIEEPVNCNDALEDTPYLDLNFDDVNYDSRM 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04407 488 MobiDBLite consensus disorder prediction 77 109 - -
Trre9g04407 488 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 46 444 - -
Trre9g04407 488 SUPERFAMILY DNA-binding domain 110 167 IPR016177 GO:0003677
Trre9g04407 488 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Trre9g04407 488 FunFam Ethylene-responsive transcription factor 2 109 168 - -
Trre9g04407 488 Pfam AP2 domain 111 159 IPR001471 GO:0003700|GO:0006355
Trre9g04407 488 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Trre9g04407 488 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Trre9g04407 488 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Trre9g04407 488 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Trre9g04407 488 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04407 Trre-Chr9 51791296 51793891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04407 47 484 AP2-EREBP Transcription Factor Family AT2G40340 33.860 7.32e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g04407 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04407 - K09286 tpra:123924097 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04407 9 51791296 51793891 Trre9g04407 9 51791296 51793891 ECH