Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04406 ATGAACAGAAAAAGGCGTCTAAATCAATCGACGAATCCAATCGATTCTCACCCCTTTGAAGCAGTTATCTATGGTTCATGGCATCCGGTGGAGTTCATAAAAGTTAAGTCAGGAACTGTAACGATACATTTCGCAGATAATCACCATATGGTTATGGACAAAGGTACTTTATCAGACATCCGTATGAGGTCAAGGAAAACTACAGTGTCAGATTGCTCCTGTTTCTTACGTCCTGGAATCGACATCTGCGTGCTATCACCCCCTCAACGAGCCGCTGACTCAGTTGGTTCAAATGTCGAGCCCGTTTGGATGGATGCTAGAATAAGTTCTATACAGAGAAAGCCGCATGGCTCAGAGTGCTCGTGTCAGTTTTTCGTCAATTTCTATGTTGATCAAGGTTCACTTGGTCTGGAGATGAGAACCCTTTGCAAGGATATCAAAGTATTCAGACTTAATCAGATCTCCATCCTCCAAAGAATCGAACATAGTCCTTGTGAAAATCAGCCCTACCGGTGGTCTTCATCCGAGGATTGCTCTTCATTGCCACACACTAAATTGCTTTTGGGAAAATTTTTAACCGATCTTTCATGGTTAATTGTTACATCGGTTCTCATGAAGGTTACGTTCTGTGTAAGATCTGTTGAAAACAAGATGGTGTATCAAGTTTTGGGAGGTGATAATAGTATTAGCTCATCGTCGAACACTGAGTCACATATTGATGTTATCGGTTTCAAAAACGACAATGGCATGTTAGTACCAATTGCTTCTCAAGTTGCTATAACTAACACCAAGAGCGTTGACCAAGCACAAGAATTCCATACGGATGAAGCGTCGCCATCTTATAATGTTGACGGCTTACGACGCTCCAAACGCAGGCATGTACAGCCTGATCGTTACCTTGGCTGCGAAGTTAAAGAATTGGATGTTGGTTCCTTTAGAAACAGGCCACCGGTTAGGATAGATACATCCTGCAAAGAAGATGACTTGCCGTTAGCGTTCTTGTTTCGTTTGCAGCAACAGAAGAGTCCAGAAAAGATCACCGACAATTGTCAGAAGGCCAACCAACCGAATCCCTCCCGGGAGCTTCTAGTGTACAATAGGAGAGCTAAAAATCGAGAGGTGAAGAAGTCTTGTGATGTTGATCATAATGAACATCATAATTCACTTGCTATTATCCCTTTTGCTAATCAAGATGCTGATCCAATAGCCGTTGAGCCTAGCGATCAAAACGGCAATGTTGCTAGAAGTGGTGAACATCAATCATCTGAAATTTCCTCAAAATATATCCATTTGATTAATACTCCCAAACCAAAGAAAAACATTAATTTGTTAGATTTTCCTGAAATGTCAGAAGATACTGTGAAGAGCGACGATGTTTCTTCAAGATGTCAATTTTTTGGAACTCCTAAGTTGCAAAGGAAGAGTTTAGGTAATTTGGATGATATGGATCTTGGAAATAGATGGGAAGGGATAAAAAGGAAAACCAATAAAGGATTTAAGGAAGGAAAATATCGTTCAACGTATTTGAGAAATCCCGGCGAAGGAGGAACTCACAAATATAAAGACAGAACATTAAATGCATCTGCATACAAGAATTTGATAAATTCATATTTATCGAATATTAATACAACAATACCGGTTGAAGAAGAAACCCCTATTATCGACCAGTGGAAGAAATGTAACACAACAAACGTTGTCGAACAAAATAAGGAGACAGAAATTTCTCATGAAAAAGCTGAAGAGGATATGTTGTGGAAAGAACTTGAAGTCGGACTGGCATCAGTTTATTTCGATGATTCAGAGGTTTCAAATGCAAATGCTTCTGCCGAGGCCGAGGAAAAGTTGAAAGAAGTTTGTGAACATGATAATAGATTGGATGAAGAAATTGGAATATACTGCATTAGATGTGGCTTTGTGACAACTCATATCAGAGATGTTAATCCAATCTTTGTTGACAAGGCAGTGTGGCGCCAAGATGAGAAGCCGTGTGATGGAGTAGAAGATAAAGAAGATCCCACCATGGCTGACGAAGATGATGATTTCCATTTTTTCCCAACTGATGCTAATGCTGAAGAACCGATATCGGAAGAAAACAAAAGCGTTTGGTCATTAATTCCTGAACTCAAAGAAAAGTTGCATATGCACCAAAAGAAAGCTTTCGAGTTTCTTTGGAACAATATTGCAGGGTCAACAAATCCAGGACTAATTGAAGCAGAATCCAAAAAACAAGGTGGCTGTGTGATATCTCATACTCCTGGTGCCGGAAAAACTTTTCTCATCATCGCTTTTCTTGTCAGCTACTTGAAGTTATTCCCTGGGAAGAGACCTCTAGTTCTTGCTCCGAAAACTACGCTCTATACTTGGTATAAAGAATTCATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCACGGTCGTAGAACCTATAGAGTGTTCAAGCAGAATTCAGTTGCGGTTCTTCCTGGAGTTCCTAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAAATACAAAAATGGCATTCGCATCCGAGTGTTCTAATCATGGGCTACACTTCGTTTTTAACATTGATGCGAGAGGATTCGAAGTTTGCACACCGAAAGTTTATGGCGAAAGTGTTGAGGGAAAGTCCTCAACTCTTGGTACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGCGAAAATGTTTGATGAAAGTGCAAACCGAGTTGAGAATATTACTGTCCGGTACTTTGTTTCAAAACAATTTCTGTGAATACTTCAACACTTTGTGCTTGGCAAGACCAAAATTCGCTCACGAAGTGTTGAAAGCATTAGACCCTAAATACAAGAGGAAAAAGAAAGGAGTAGCAGGGAAAGGAGCAGAAAAGGCGCAATATTTGATCGAGTCACGGGCTAGAAAATTCTTCTTAGATACAATCGCTAAGAAAATTGACTCAAATGTTGGTGATGAAAGGCTGCAAGGCTTAAACATGTTGAGAAATGTGACAAATGGTTTTATCGATGTTTATGAAGGTGGAAGTTCTGATGGTTTACCTGGTTTACAGATTTATACACTGCTAATGAACACAACCGATATACAGCATGAGATTCTGAAGAAACTTCACAGCGACATGGCTAAGTGCAGTGGTTACCCTCTCGAGTTAGAGCTTTTGATAACTCTTGGATCGATACATCCTTGGTTGGTCAAAACCGCGGTATGTTCTCAAAAGTTTTTAACAAAGGAGCAATTGAGTGATCTAGATAAGTACAAGTTTGATTTGAAAATCGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGCGTTGTCAAGAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAGACTATTTCAAGAATATTTCGAGAAATTCTTTGGATGGCAAAAAGGCCGTGAAGTTTTAGTACTAACTGGGGAACTCGAGCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCCGGTGGTGTATCTAAGATACTACTTGCTTCAATTACAGCCTGTGCTGAAGGCATTAGTTTGACAGCGGCATCTCGTGTGATTATGTTGGATTCAGAATGGAACCCTTCGAAAACAAAGCAAGCTATTGCGCGTGCGTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCGTTGGAGGAAGATAAATATCGAAGAACCACGTGGAAAGAGTGGGTGTCGAGCATGATTTTCAGTGAGGCGTTTGTCGAGGATCCTTCTCGTTGGCAAGCTGAGAAGATTGAAGATGATATTCTAAGAGAAATGGTCGAGGAGGATAAGTCGAAATCATTTCATATGATTATGAAGAATGAAAAAGCTTCAACAAACAACAGATAA 3900 0.4015 MNRKRRLNQSTNPIDSHPFEAVIYGSWHPVEFIKVKSGTVTIHFADNHHMVMDKGTLSDIRMRSRKTTVSDCSCFLRPGIDICVLSPPQRAADSVGSNVEPVWMDARISSIQRKPHGSECSCQFFVNFYVDQGSLGLEMRTLCKDIKVFRLNQISILQRIEHSPCENQPYRWSSSEDCSSLPHTKLLLGKFLTDLSWLIVTSVLMKVTFCVRSVENKMVYQVLGGDNSISSSSNTESHIDVIGFKNDNGMLVPIASQVAITNTKSVDQAQEFHTDEASPSYNVDGLRRSKRRHVQPDRYLGCEVKELDVGSFRNRPPVRIDTSCKEDDLPLAFLFRLQQQKSPEKITDNCQKANQPNPSRELLVYNRRAKNREVKKSCDVDHNEHHNSLAIIPFANQDADPIAVEPSDQNGNVARSGEHQSSEISSKYIHLINTPKPKKNINLLDFPEMSEDTVKSDDVSSRCQFFGTPKLQRKSLGNLDDMDLGNRWEGIKRKTNKGFKEGKYRSTYLRNPGEGGTHKYKDRTLNASAYKNLINSYLSNINTTIPVEEETPIIDQWKKCNTTNVVEQNKETEISHEKAEEDMLWKELEVGLASVYFDDSEVSNANASAEAEEKLKEVCEHDNRLDEEIGIYCIRCGFVTTHIRDVNPIFVDKAVWRQDEKPCDGVEDKEDPTMADEDDDFHFFPTDANAEEPISEENKSVWSLIPELKEKLHMHQKKAFEFLWNNIAGSTNPGLIEAESKKQGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQNSVAVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKFMAKVLRESPQLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKALDPKYKRKKKGVAGKGAEKAQYLIESRARKFFLDTIAKKIDSNVGDERLQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQHEILKKLHSDMAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKFFGWQKGREVLVLTGELELFERGKIMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNR 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04406 1299 CDD SF2_C_SNF 1092 1228 - -
Trre9g04406 1299 Gene3D - 1022 1299 IPR027417 -
Trre9g04406 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1296 IPR044567 GO:0080188
Trre9g04406 1299 MobiDBLite consensus disorder prediction 270 289 - -
Trre9g04406 1299 CDD DEXHc_ATRX-like 712 938 - -
Trre9g04406 1299 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Trre9g04406 1299 SMART helicmild6 1128 1217 IPR001650 -
Trre9g04406 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 737 937 IPR014001 -
Trre9g04406 1299 SMART ultradead3 708 953 IPR014001 -
Trre9g04406 1299 Gene3D - 685 977 IPR038718 -
Trre9g04406 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1280 IPR027417 -
Trre9g04406 1299 Pfam SNF2-related domain 708 951 IPR000330 GO:0005524|GO:0140658
Trre9g04406 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 939 IPR027417 -
Trre9g04406 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1264 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04406 Trre-Chr9 51779320 51783963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04406 1096 1235 RAD5 or RAD16-like Gene Family AT5G43530 32.867 2.60e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre9g04406 SNF2_N 6.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04406 K10875 - gmx:100811703 1780.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04406 9 51779320 51783963 Trre9g04406 9 51779320 51783963 ECH
Trre5g02137 5 16000948 16005531 Trre9g04406 9 51779320 51783963 PCT