Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04403 ATGTTGCAGGAGCTTCCAATTCACCAAAGAGCTGATGCAGTGAGTAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGGGATCCAGTTTATGGTTGTGTTGGAGCAATATCTTATTTACAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTTTGCATCCAAATGCAAAATGAACAAGTGATTCCAACACAAGAAATTAATCAAGATCAGAAATCTTATTTTATTCAAGATGAACTCACTCAATATCTTAATTATGGTTCTTCTTCTAGTAATAATGTAATTCATGATTCTCTTAAGAGAGATAATATGTATGGACATGATATGGTTTCATGA 354 0.339 MLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTQEINQDQKSYFIQDELTQYLNYGSSSSNNVIHDSLKRDNMYGHDMVS 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04403 117 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 85 - -
Trre9g04403 117 Coils Coil 36 56 - -
Trre9g04403 117 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre9g04403 117 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04403 Trre-Chr9 51736894 51738150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04403 1 82 AS2 family AT2G30130 75.581 4.64e-41 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre9g04403 LOB 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04403 - - cave:132186671 189.889