Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04397 ATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTGCTCCTAAACCATCATCTGGACCACACAAGTCAAGGGAATGTCTTCCACTCATTCTCATTTTGCGAAACAGGTTGAAGTATGCTTTGACATACCGTGAGGTTATTGCTATTCTTATGCAGCGTCATGTTCTTGTTGACGGGAAAGTCAGGACTGACAAGACTTATCCAGCTGGATTCATGGATGTTGTGTCAATTCCTAAAACCAATGAGAACTTTCGCCTGCTCTATGACACTAAAGGCCGTTTCCGTCTCCACTCAGTTAGGGATGATGAGGCAAAGTTCAAGCTCTGCAAGGTTCGCTCAGTTCAATTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACTATCCGCTACCCAGACCCTGTCATCAGGGCCAATGACACCATCAAGCTGGATCTGGAGGAAAACAAGATTGTTGATTTCATCAAATTCGATGTTGGTAATGTTGTGATGGTTACTGGTGGAAGGAATAGAGGGCGTGTCGGAGTGATCAAGAACAGGGAAAAGCATAAGGGAACTTTCGAGACAATCCACGTTCAGGATGCTACTGGTCATGAATTTGCAACTCGTTTGGGAAATGTGTTCACTATTGGTAAGGGAACAAAGCCATGGGTATCTCTTCCTAAGGGTAAGGGTATTAAGCTAACCGTCATCGAGGAAGCTAGAAAGAGGGCTGCTGCAGCCCAACAAGCAATTGCTGCTTAA 798 0.4549 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRAAAAQQAIAA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04397 265 Pfam Ribosomal family S4e 95 169 IPR013845 -
Trre9g04397 265 CDD S4 51 112 - -
Trre9g04397 265 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Trre9g04397 265 FunFam 40S ribosomal protein S4 1 117 - -
Trre9g04397 265 Gene3D - 122 172 IPR038237 -
Trre9g04397 265 SMART kow_9 174 201 IPR005824 -
Trre9g04397 265 SMART s4_6 42 106 IPR002942 GO:0003723
Trre9g04397 265 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trre9g04397 265 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Trre9g04397 265 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
Trre9g04397 265 Pfam KOW motif 177 210 IPR005824 -
Trre9g04397 265 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trre9g04397 265 FunFam 40S ribosomal protein S4 122 172 - -
Trre9g04397 265 Pfam S4 domain 47 90 IPR002942 GO:0003723
Trre9g04397 265 Gene3D - 175 245 IPR014722 -
Trre9g04397 265 Gene3D - 1 117 IPR036986 GO:0003723
Trre9g04397 265 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 254 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trre9g04397 265 FunFam 40S ribosomal protein S4 175 245 - -
Trre9g04397 265 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Trre9g04397 265 CDD KOW_RPS4 175 229 IPR041982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04397 Trre-Chr9 51697827 51699924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04397 1 262 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.221 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04397 K02987 - gmx:100795220 478.018