Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04390 ATGAATCTTTCTAGATCTTTGTGGTTTGTAACAATAACAGTGTGTTTCTTGTTTCTTAACTTGAGTTTTTGTTGCTATTCTTTGAATGAAGAAGGTAATGCTCTTTTGAAGTTGAAGAAGAGAATAACTAGTGACCCTTTTGATGCTTTGTTAAATTGGGTTGATGATGAAGTTGTTCTTGATCCTTGTGATTGGTTTGGAGTTGAATGCTCAGATACAAAAAAAGTTGTAATCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACTCTAGCACCAGAGCTTATGAACCTAGTTCACATAAAGTCTATTATTTTAAGGAACAACTCTTTCTATGGAACCATACCTGAAGAAATTGTAAGCTTGAAAGAATTGGAGATTTTGGATTTGGGATATAACAATTTCAGTGGAAATCTAGATGCTAATTTTGGCCAGAATTTCCAATCACTAGCAATTCTTTTGCTAGACAACAATGAGCTCCTTGTTGGTTTCTCTCCCAAAATTAATGAGCTGAAAATGCTTTCGGAGTGTCAAGTAGACGAAAGCCGGTTAACCGATGAAGCTAAGTTTCCATCTTGTTCCAAAAGATCCATCACATGGCATGTTCATGTAAATGAAGGTCCTAGGAAACTAATAGCATATCACAAACAATCTCGCCATGCTCGTCGTAACGATACTTCTCGTAATGATACTTCTCATAATCAAACTTCGCCTCTATATAGATTTCCTCCTTCACATTCTCCATCGGCCGCAGCAGTACCAACGGTCCCAAATCTAGCTTCCGATTCTCCTAATCAAAATGCTCCTGATTCTCCTAATCAAAATGCTTCTGATTCTCCAACTAAAACCACATCATCAAAGAAGAATAAAGTTCCTATTCTTGCCGGAGTTATTATTGGCGGTGCTGTTTTTCTCGTGATTTCAAGCATTGGTATATATCTTTGTAAAACCAACAAAGTAGCTATTGTTAAACCTTGGACTACAGGAATAAGTGGACAACTTCAAAAGGCACTTGTCACCGGTGTGCCAAAGCTAAAGAGATCGGATCTTGAAGCAGCATGTGAAGATTTTAGCAATGTAATTGGTGATTCGCCAATCGGTACTTTGTACAAAGGAACTTTGTCTAGTGGAGTTGAAATTGCTGTAGCTTCTGTTTCTGTCATGTCAAAGAATTGGACAAAGGCTTTAGAAGCTCAATTTAGGAAGAAGATAGACACATTATCAAAAGTGAATCACAAGAATTTTGTCAATCTTATTGGTTATTGTGAAGAAGAAGAGCCTTTCACCAGAATGTTGGTTTTCGAATATGCTCCAAATGGAACGTTATTTGAGCATTTACACGTAAAAGAAGCTGAGCACTTGAATTGGATACCAAGACTTAGAATTGCAATGGGAATGGCTTACTGCCTACAACATATGCATGAATTGGACCCTCCTGTAGTCCTTACCAACTTGAGTTCTTCCGCCGTCCACCTAACCGATGACTACGCTGCAAAAGTCTCGGATTTGAGTTTCTCTTACGAAATAGATTCATCCGAAAAGAAACCTGATGGTAAGAAACAAAATGACATGATGCAATCAACAAGTCCAGCAAGTAATGTTTACAACTTTGGTGTTTTGTTATTCGAAATGGTTACCGGTCGAATTCCTTATTCGGTTGATAATAGCTCGCACGAAAATTGGGCATCACATTATCTAAAATGGGATAAACCACTTAAGGAAATGGTTGATTCAACTCTAACATCTTACCAAGAAGATCAAGTGGAACAAGTTGCTGAATTGATAAGAGTTTGTGTCGATCCGGATTCGGAGAAAAGACCGAGAATGAATGAAGTCAGTGAAAGATTGAGAGAGATAACGAAAATGTCGCCCGAATTTGTAGTTCCAAAACTATCTCCACTTTGGTGGGCTGAGATTGAGATTTCTTCTGCATAA 1932 0.3778 MNLSRSLWFVTITVCFLFLNLSFCCYSLNEEGNALLKLKKRITSDPFDALLNWVDDEVVLDPCDWFGVECSDTKKVVILNLKDLCLEGTLAPELMNLVHIKSIILRNNSFYGTIPEEIVSLKELEILDLGYNNFSGNLDANFGQNFQSLAILLLDNNELLVGFSPKINELKMLSECQVDESRLTDEAKFPSCSKRSITWHVHVNEGPRKLIAYHKQSRHARRNDTSRNDTSHNQTSPLYRFPPSHSPSAAAVPTVPNLASDSPNQNAPDSPNQNASDSPTKTTSSKKNKVPILAGVIIGGAVFLVISSIGIYLCKTNKVAIVKPWTTGISGQLQKALVTGVPKLKRSDLEAACEDFSNVIGDSPIGTLYKGTLSSGVEIAVASVSVMSKNWTKALEAQFRKKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHVKEAEHLNWIPRLRIAMGMAYCLQHMHELDPPVVLTNLSSSAVHLTDDYAAKVSDLSFSYEIDSSEKKPDGKKQNDMMQSTSPASNVYNFGVLLFEMVTGRIPYSVDNSSHENWASHYLKWDKPLKEMVDSTLTSYQEDQVEQVAELIRVCVDPDSEKRPRMNEVSERLREITKMSPEFVVPKLSPLWWAEIEISSA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04390 643 ProSiteProfiles Protein kinase domain profile. 354 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04390 643 MobiDBLite consensus disorder prediction 215 286 - -
Trre9g04390 643 Gene3D Transferase(Phosphotransferase) domain 1 436 626 - -
Trre9g04390 643 Gene3D Ribonuclease Inhibitor 27 235 IPR032675 -
Trre9g04390 643 MobiDBLite consensus disorder prediction 250 286 - -
Trre9g04390 643 SUPERFAMILY Protein kinase-like (PK-like) 348 635 IPR011009 -
Trre9g04390 643 Pfam Protein tyrosine and serine/threonine kinase 357 615 IPR001245 GO:0004672|GO:0006468
Trre9g04390 643 SUPERFAMILY L domain-like 35 186 - -
Trre9g04390 643 PANTHER PROTEIN MALE DISCOVERER 2 11 642 - -
Trre9g04390 643 FunFam Inactive receptor-like serine/threonine-protein kinase 328 435 - -
Trre9g04390 643 FunFam Nuclear pore complex protein NUP107 28 188 - -
Trre9g04390 643 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Trre9g04390 643 Gene3D Phosphorylase Kinase; domain 1 327 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04390 Trre-Chr9 51652288 51655828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04390 3 567 Receptor kinase-like Gene Family AT2G23950 26.361 4.14e-42 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre9g04390 PK_Tyr_Ser-Thr 2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04390 - - gmx:100820416 800.431