Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04386 ATGAATGATCCTAGATCAAAAATGATGATTTCTCCTGGTTTATTACCAACAGAATCATTACTAGATTCATTGGTTTTAATAACCAGTGAAATTAGTTCAATTGAAAAATTTCCATTAGTACAAATAAAAAATGTATCATCTATGATAAGAAGGATTAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATACACCACTTCCACCTTCATCAATTCTTTGTTTTACAGAAATATTTTCTGTGATTACAAGAGTGAAGATTTTGATTCAAGAGTTGAAAGATGGAAGTTCTCTTTGGAGTCTAATACAATTAGAGTTCATTTCAAATCAATTTTTTGTGCTTGTAAAAGAATTTGGAAGAGCTTTTGATATTCTTCCTTTGAATTTGCTTAATATAACACATGATATAAAGGAGCAAATTGAGCTTGTTCATAAACAAGCTAAGAGAGTTGAATTGTTCATTGATCCTAGAGAGGTTCAAAGAAGGGAAAAGCTTTTACAAGTAATGTCGAAAAATTGTTTACAAAATAATAAGAACAATAAAGGGTTTATTGATTTTTTGAAAGTGGAAGAAATTATGAGTAGCATTGGTTTGATAACTTTATTGGATTATGTCGAAGAAATATCGAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACAGGTGGACTAATCGTCGTCTCAAATATAAACAATCTCATGTTACTTGTTTCGTATACCAAATCAATGGTATTCCGAAACGGAGAAAAAAGTGATGGTGAATATTCGGATGAGATAACACTTTTAGCATCCAAAGATTCAAGAATCCAAGAACACGTTGTAACCGCCTTGTTCAACCTATCGATCTACGACAACAACAAGATTCTAATCATGGCAGCCGGAGCGGTCGACAATATAGTCGAAGTACTCGAATCGGGAAAAACTATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGTTTATCAATGTTAGATGATTGTAAAGTTCAAATTGGAGCAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATAGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTATATAACCCTAATAAGTTAAGTATTGTTAAAAGTGGAGCAGTTAGTTTACTTGTTGAGTTGTTAATGGATGATAAAGCCAGTATAACGGACGATTCATTAGCGGTGCTAGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAGAATAGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCTGTTAAAGGGAAAGAAAATTCAATAACTGTTTTACTTGGATTGTGTAAAGAAGAAGGAGAAATGGTTGCAAGGAAGTTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCAAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 1515 0.336 MNDPRSKMMISPGLLPTESLLDSLVLITSEISSIEKFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTPLPPSSILCFTEIFSVITRVKILIQELKDGSSLWSLIQLEFISNQFFVLVKEFGRAFDILPLNLLNITHDIKEQIELVHKQAKRVELFIDPREVQRREKLLQVMSKNCLQNNKNNKGFIDFLKVEEIMSSIGLITLLDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNGEKSDGEYSDEITLLASKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVSLLVELLMDDKASITDDSLAVLAVLLGCSQGLEEIKNSKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGEMVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04386 504 FunFam RING-type E3 ubiquitin transferase 310 497 - -
Trre9g04386 504 PANTHER U BOX DOMAIN-CONTAINING 262 498 - -
Trre9g04386 504 Gene3D - 258 503 IPR011989 -
Trre9g04386 504 SUPERFAMILY ARM repeat 261 493 IPR016024 -
Trre9g04386 504 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Trre9g04386 504 SMART arm_5 410 451 IPR000225 GO:0005515
Trre9g04386 504 SMART arm_5 369 409 IPR000225 GO:0005515
Trre9g04386 504 SMART arm_5 327 368 IPR000225 GO:0005515
Trre9g04386 504 SMART arm_5 285 326 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04386 Trre-Chr9 51640518 51642611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04386 261 503 U-box Gene Family AT3G46510 45.528 1.25e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04386 - - tpra:123924117 484.952