Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04385 ATGAATGATCCTAGATCAAAAATGATGATTTCTCCTGGTTTATTACCAACAGAATCATTACTAGATTCATTGGTTTTAATAACCAGTGAAATTAGTTCAATTGAAAAATTTCCATTAGTACAAATAAAAAATGTATCATCTATGATAAGAAGGATTAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATACACCACTTCCACCTTCATCAATTCTTTGTTTTACAGAAATATTTTCTGTGATTACAAGAGTGAAGATTTTGATTCAAGAGTTGAAAGATGGAAGTTCTCTTTGGAGTCTAATACAATTAGAGTTCATTTCAAATCAATTTTTTGTGCTTGTAAAAGAATTTGGAAGAGCTTTTGATATTCTTCCTTTGAATTTGCTTAATATAACACATGATATAAAGGAGCAAATTGAGCTTGTTCATAAACAAGCTAAGAGAGTTGAATTGTTCATTGATCCTAGAGAGGTTCAAAGAAGGGAAAAGCTTTTACAAGTAATGTCGAAAAATTGTTTACAAAATAATAAGAACAATAAAGGGTTTATTGATTTTTTGAAAGTGGAAGAAATTATGAGTAGCATTGGTTTGATAACTTTATTGGATTATGTCGAAGAAATATCGAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACAGGTGGACTAATCGTCGTCTCAAATATAAACAATCTCATGTTACTTGTTTCGTATACCAAATCAATGGTATTCCGAAACGGAGAAAAAAGTGATGGTGAATATTCGGATGAGAGTAAGTCATTATCTATGTTTTCATACAACAAAAGTAAAATATATGATAATGATAGTTCTTCATCTTCTTTTTCTCAATCCATGATGTCGTCAACAATTAATATTCCGGACGAATTTCGTTGTCCGATTTCACTAGACCTAATGAGGGATCCTGTGATTGTTTCATCAGGACATACTTATGATCGAATTTCGATTGCAGAATGGATAAATTCTGGTCACCATACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCATTAATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCTACGAAAACAATGTCTCGGTAAACGAACCAAAGGGAAACACCAACAGTGGAAGTAGCAGCAAGAGGCACAAGAATGAGAATGCAATTGATCATATTTCAGCAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAGTTTCTAGTTGGAAAATTAGCAACCGGATCGACCAATATCCAAAGACAATCCGCGTACGAGATTCGTCTGCTCGCAAAAACCGGCGCGGACAACCGAAGAATCATAGCTGAGGTAGGCGCTATTCCGTTTCTAGTAACACTTTTAGCATCCAAAGATTCAAGAATCCAAGAACACGTTGTAACCGCCTTGTTCAACCTATCGATCTACGACAACAACAAGATTCTAATCATGGCAGCCGGAGCGGTCGACAATATAGTCGAAGTACTCGAATCGGGAAAAACTATGGAAGCAAGAGAAAATGCTGCAGCAGCAATATATAGTTTATCAATGTTAGATGATTGTAAAGTTCAAATTGGAGCAAGTTCAAAAGCAATACCTGCATTAGTGTTACTTCTAAAAGAAGGTACACCAATAGGTAAAAGAGATGCTGCTATTGCATTGTTTAATCTTGCAGTATATAACCCTAATAAGTTAAGTATTGTTAAAAGTGGAGCAGTTAGTTTACTTGTTGAGTTGTTAATGGATGATAAAGCCAGTATAACGGACGATTCATTAGCGGTGCTAGCCGTGTTATTAGGTTGTTCACAAGGGTTAGAAGAGATAAAGAATAGTAAAAGTTTGGTGCCTATTCTTATTGATCTTTTGAGATTTGGTTCTGTTAAAGGGAAAGAAAATTCAATAACTGTTTTACTTGGATTGTGTAAAGAAGAAGGAGAAATGGTTGCAAGGAAGTTGTTGGCAAATCCAAGGAGTATTCCATCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCAAGAAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCAACATTCTTTGTGA 2094 0.3515 MNDPRSKMMISPGLLPTESLLDSLVLITSEISSIEKFPLVQIKNVSSMIRRIKLLSSLFEEIQESDTPLPPSSILCFTEIFSVITRVKILIQELKDGSSLWSLIQLEFISNQFFVLVKEFGRAFDILPLNLLNITHDIKEQIELVHKQAKRVELFIDPREVQRREKLLQVMSKNCLQNNKNNKGFIDFLKVEEIMSSIGLITLLDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMLLVSYTKSMVFRNGEKSDGEYSDESKSLSMFSYNKSKIYDNDSSSSSFSQSMMSSTINIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVSVNEPKGNTNSGSSSKRHKNENAIDHISANKASKDAVKMTAEFLVGKLATGSTNIQRQSAYEIRLLAKTGADNRRIIAEVGAIPFLVTLLASKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVDNIVEVLESGKTMEARENAAAAIYSLSMLDDCKVQIGASSKAIPALVLLLKEGTPIGKRDAAIALFNLAVYNPNKLSIVKSGAVSLLVELLMDDKASITDDSLAVLAVLLGCSQGLEEIKNSKSLVPILIDLLRFGSVKGKENSITVLLGLCKEEGEMVARKLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPQHSL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04385 697 MobiDBLite consensus disorder prediction 369 389 - -
Trre9g04385 697 SUPERFAMILY RING/U-box 283 369 - -
Trre9g04385 697 CDD RING-Ubox_PUB 296 348 IPR045210 -
Trre9g04385 697 MobiDBLite consensus disorder prediction 369 384 - -
Trre9g04385 697 SMART arm_5 603 644 IPR000225 GO:0005515
Trre9g04385 697 SMART arm_5 562 602 IPR000225 GO:0005515
Trre9g04385 697 SMART arm_5 520 561 IPR000225 GO:0005515
Trre9g04385 697 SMART arm_5 478 519 IPR000225 GO:0005515
Trre9g04385 697 SMART arm_5 437 477 IPR000225 GO:0005515
Trre9g04385 697 ProSiteProfiles U-box domain profile. 294 368 IPR003613 GO:0004842|GO:0016567
Trre9g04385 697 Gene3D - 550 689 IPR011989 -
Trre9g04385 697 SUPERFAMILY ARM repeat 407 686 IPR016024 -
Trre9g04385 697 FunFam RING-type E3 ubiquitin transferase 371 525 - -
Trre9g04385 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 370 IPR013083 -
Trre9g04385 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515
Trre9g04385 697 PANTHER U BOX DOMAIN-CONTAINING 43 691 - -
Trre9g04385 697 FunFam RING-type E3 ubiquitin transferase 294 368 - -
Trre9g04385 697 SMART Ubox_2 298 361 IPR003613 GO:0004842|GO:0016567
Trre9g04385 697 Gene3D - 380 546 IPR011989 -
Trre9g04385 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 574 IPR000225 GO:0005515
Trre9g04385 697 Pfam U-box domain 295 365 IPR003613 GO:0004842|GO:0016567
Trre9g04385 697 Pfam Armadillo/beta-catenin-like repeat 439 476 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04385 Trre-Chr9 51640518 51642611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04385 19 696 U-box Gene Family AT3G46510 36.603 3.20e-126 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04385 - - tpra:123924117 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04385 9 51640518 51642611 Trre9g04385 9 51640518 51642611 ECH