Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04377 ATGGATTCACCTCTTCAAGAAACCAAACCCACCGTCAACACCGTTGTTACTACCACTCTGAGTGAAACATCTAACAACAGCACTGATGAATCATCAGTGCTGTTGTTAGATACTAATAACAACAACACCAGTACCAGCACCGCCAACACCAACAATAATAACGATAAACAGAACCGTAAATGCAAAGGTAAAGGTGGACCTGATAATAACAAATTTCGATATCGTGGTGTTCGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCACGTAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTTTATGGTTCTAGAGCTCAACTTAATCTTCAACCTTCTTCTTCAATTTCCAATAATTCTTCTTCTTCTTCTTCTACCTCTTCTCGTTTAAATCCTTCAAATTCCAATAATACCCTTCGTCCTTTACTTCCTCGTCCTTCTGGTTTCTCTTTCACTTACCCTTTTTCTTTTTACAATCATTTTCATCATCAAGAATTGGTGCAACTGCAACAGCAACAACAACTTCAATATCAATATAATCAACAACAGCTACATAATCAAGATTTTGAACATGCAAGTGGTGATTCTGTTAGATCAGTTACCTCGTACCAGAATAATCATGTTCATGGTACTAAATATGCCGATGAAGATGAATTGCATGCACAACATGTTTTGAATATTCAACAACAGAACCAGGTGAATAATATTCAGAATTTTATGGTTGAGGGTTCTTTGGTGGGGTTATCAAGTTTTGAGGGTTCTTCTCAAAATAATAATAATAATATGGATGGAACAGTGGTGGATCCAGATCCAGATTCTATGTGGCCATCTTTGGAGAATGTGGAAGATTATACAACAACTAGTTTATGGGATTATAATGATCCTTTCTTCTTTGATTTTTGA 960 0.3677 MDSPLQETKPTVNTVVTTTLSETSNNSTDESSVLLLDTNNNNTSTSTANTNNNNDKQNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQPSSSISNNSSSSSSTSSRLNPSNSNNTLRPLLPRPSGFSFTYPFSFYNHFHHQELVQLQQQQQLQYQYNQQQLHNQDFEHASGDSVRSVTSYQNNHVHGTKYADEDELHAQHVLNIQQQNQVNNIQNFMVEGSLVGLSSFEGSSQNNNNNMDGTVVDPDPDSMWPSLENVEDYTTTSLWDYNDPFFFDF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04377 319 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Trre9g04377 319 MobiDBLite consensus disorder prediction 57 73 - -
Trre9g04377 319 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Trre9g04377 319 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Trre9g04377 319 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Trre9g04377 319 MobiDBLite consensus disorder prediction 270 289 - -
Trre9g04377 319 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Trre9g04377 319 MobiDBLite consensus disorder prediction 1 73 - -
Trre9g04377 319 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 21 287 - -
Trre9g04377 319 MobiDBLite consensus disorder prediction 1 56 - -
Trre9g04377 319 FunFam Ethylene-responsive transcription factor 2 73 131 - -
Trre9g04377 319 MobiDBLite consensus disorder prediction 270 285 - -
Trre9g04377 319 MobiDBLite consensus disorder prediction 130 162 - -
Trre9g04377 319 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Trre9g04377 319 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Trre9g04377 319 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04377 Trre-Chr9 51585277 51586236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04377 59 166 AP2-EREBP Transcription Factor Family AT2G40220 76.364 8.90e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g04377 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04377 K09286 - gmx:100301892 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04377 9 51585277 51586236 Trre9g04377 9 51585277 51586236 ECH