Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04376 ATGTCGAACCACAACAGCTTCAAAACATTCGACTGGACCTTCGACACACAACCCGAAAACGAACCACTCCAAATCAAAGGCGGAAAACTCCTCTTCTTCATCGCCATCTTCACCATCATCATCCTTTTCACTTTAATCTTCCTCTGTGCTCGCTGGATCTTCCGTAACCGAGGTCTCCTCAATCCTCCTCACGCGCCGTCACACACAACCGCATTTCCTTCTCCATCACAAGGACTCGACGCAGACGCTATCAAGAAGCTTCCGATTATTCTACATCAAACAGATTATTCCAATCGTGGTTTGGAGGAAACGGAATGTTGTATCTGTTTAAGCGCGTTTAAAGATGGTGATAAGCTGAAAGTGTTACCGAGTTGTGATCATTGTTTTCATTGTGAATGTGTTGATGTTTGGCTTATGAATCATTCTAGTTGTCCTTTGTGTAGAGCTTCTCTTAAAATCGATTATGAGTTTCCACAGATTTTGATTCAAGAACCACCTATTAGATATAATAATAATAATGTTCCACTTTAA 531 0.4124 MSNHNSFKTFDWTFDTQPENEPLQIKGGKLLFFIAIFTIIILFTLIFLCARWIFRNRGLLNPPHAPSHTTAFPSPSQGLDADAIKKLPIILHQTDYSNRGLEETECCICLSAFKDGDKLKVLPSCDHCFHCECVDVWLMNHSSCPLCRASLKIDYEFPQILIQEPPIRYNNNNVPL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04376 176 SMART ring_2 106 147 IPR001841 -
Trre9g04376 176 CDD RING-H2_EL5-like 105 148 - -
Trre9g04376 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Trre9g04376 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 153 - -
Trre9g04376 176 Pfam Ring finger domain 105 148 IPR001841 -
Trre9g04376 176 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre9g04376 176 FunFam RING-H2 finger protein ATL66 71 153 - -
Trre9g04376 176 SUPERFAMILY RING/U-box 97 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04376 Trre-Chr9 51574715 51575245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04376 15 154 C3H Transcription Factor Family AT3G11110 41.259 1.04e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04376 - - gmx:100794554 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02110 5 15732778 15733302 Trre9g04376 9 51574715 51575245 PCT