Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04373 ATGAGTCAGTTAGATAAAGATGTGTATAACAAGGTGAAGAAGAAGTTGAAGAACAGAAACAAACACGTTGGAAGTAGTTACAACACAAAAAATAAAAACAGTTTCAACTTGATTAAGGTTCAAGACGCGATGATTAGCGCAAACTCAAATTCCAATTCCAATGGCGGTGTTGATGAAAACGGCGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGATGAAACATTGGTGAAATTGGTAAAAGAATACGGTGCAAGAAACTGGTCTGTCATAAGCAACGGAATCCCTGGTCGTTCTGGAAAATCATGCCGTCTCCGGTGGTGTAATCAGCTGAGTCCTGACGTTCAACACCGTCCTTTTACTCCGGCGGAAGATAACATCATAATTCAAGCGCACGCACTTCATGGAAACAAATGGGCGACGATTTCGCGTCTTTTACCAGGTAGAACTGATAACGCGATTAAAAACCACTGGAATTCAACTCTCCGCCGTCGTCGTACGGAGGCGCCGGTGAATTCGAATCAGATAATGCCGGTGATTTCCTCCGCCGTGAGTATAGGAAAACGTGCGCCAAATATGTATGACGGTTATAATAACGGTTTGTTGGATCTCGGTTACGGTTGTAAACGGCAATGTGTTGAGAATAATAACGGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAAGAAGATGCGGGTAATGGTGTTACTGTTATGACGTCGTTAAGTTTGTGTCCACCTGGTGAGAAATTGATGAAAGAAGAAAAAGAGAAAAAAGAAAAGGAACGAGATTTTGATTTTGATGATAATTTGAAGTTGCTGGGAAACGATAATTTGAGGTCTATTATTCAGCGTATGATAGCAGAAGAAGTTAGGAATTATGTTGATAACATGCGCCTTGATGGATTTCAACTTGGAAATCCTGATTCAAGAAAGTGA 939 0.4121 MSQLDKDVYNKVKKKLKNRNKHVGSSYNTKNKNSFNLIKVQDAMISANSNSNSNGGVDENGDKVKGSWSPQEDETLVKLVKEYGARNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDNIIIQAHALHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTEAPVNSNQIMPVISSAVSIGKRAPNMYDGYNNGLLDLGYGCKRQCVENNNGSRDGEETVTEEEDAGNGVTVMTSLSLCPPGEKLMKEEKEKKEKERDFDFDDNLKLLGNDNLRSIIQRMIAEEVRNYVDNMRLDGFQLGNPDSRK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04373 312 MobiDBLite consensus disorder prediction 49 70 - -
Trre9g04373 312 CDD SANT 67 109 IPR001005 -
Trre9g04373 312 Pfam Myb-like DNA-binding domain 65 111 IPR001005 -
Trre9g04373 312 Pfam Myb-like DNA-binding domain 119 161 IPR001005 -
Trre9g04373 312 CDD SANT 119 162 IPR001005 -
Trre9g04373 312 Gene3D - 119 165 - -
Trre9g04373 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 111 IPR017930 -
Trre9g04373 312 SUPERFAMILY Homeodomain-like 62 158 IPR009057 -
Trre9g04373 312 SMART sant 64 113 IPR001005 -
Trre9g04373 312 SMART sant 116 164 IPR001005 -
Trre9g04373 312 ProSiteProfiles Myb-like domain profile. 60 111 IPR001005 -
Trre9g04373 312 FunFam MYB transcription factor 65 116 - -
Trre9g04373 312 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Trre9g04373 312 Gene3D - 64 116 - -
Trre9g04373 312 PANTHER MYB PROTEIN-RELATED 65 226 - -
Trre9g04373 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 166 IPR017930 -
Trre9g04373 312 FunFam Transcription factor MYB44 119 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04373 Trre-Chr9 51557475 51558896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04373 61 165 MYB Transcription Factor Family AT5G67300 71.429 4.52e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04373 Myb_DNA-binding 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04373 - - cam:101514420 343.584