Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre9g04370 | ATGGCGGCCGCGAACGCTCCGATCGCCATGAAAGAAGTCCTAACCTTACCGAGTGTTGGAATCAATTCACAATTCATCACTTTCACTCATGTGACTATGGAATCGGACAAGTATATATGTGTTCGAGAAACATCTCCACAGAATAGCGTTGTTATTGTTGATATGAGCATGCCAAATCAACCTTTGAGGAGGCCAATTACTGCTGATTCGGCTCTTATGAATCCGAATTCCAGAATTCTTGCTTTGAAAGCTCAACTGCAAGGGACTACACAGGATCACCTACAAATATTTAACATTGAATTGAAAACGAAGATGAAATCACATCAGATGCCCGAGCAGGTAGTCTTCTGGAAGTGGATTAGCCCCAAAATGCTGGGCCTCGTGACACAAACCTCTGTATACCACTGGTCAATCGAAGGTGATTCTGAACCTGTTAAGATATTTGAGAGAACAGCGAATTTGGCGAACAACCAGATAATCAATTATCGATGCGACCCTACGGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCCCCCGAGAGGCCACAATTGGTTAAAGGGAACATGCAGCTTTTCTCCGTGGATCAGCAGCGTAGTCAGGCACTTGAAGCTCATGCTGCATCATTTGCCCAATTCAAAGTTTCTGGGAATGAAAATCCTTCTGTTTTGATTGCTTTTGCCTCAAAGACACTTAATGCTGGTCAAGTTATATCCAAGTTACATGTCATTGAATTGGGCGCGCAGCCAGGGAAACCATCATTTTCAAAGAAACAAGCAGATCTTTTCTTCCCCCCAGATTTTGCTGATGACTTTCCAGTTGCAATGCAGATATCCCACAAATATAGTTTGATCTATGTGATTACCAAACTTGGCCTACTTTTTGTATACGATTTGGAGACAGCTACGGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCGACATCAGCAGGAGGATTTTATGCCATTAATAGGAGAGGCCAAGTTTTGTTGGCTACTGTTAATGAACAAACAATTGTGAATTTTGTCAGCGGTCAATTAAACAATTTGGAGCTAGCTGTTAGTCTTGCCAAAAGAGGAAATCTTCCCGGTGCTGAGAAGCTGGTTGTGGAGCGTTTTCATGAATTGTTTTCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTTCGCACTCCTGACACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGTCAAACTCCGCCGCTGCTGCAGTATTTTGGAACACTTTTAACGAGGGGAAAGCTGAATGCCTTTGAATCATTAGAGTTATCTCGGTTGGTTGTGAACCAAAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATACATCAAAGCTAGAGCTACTCCGAAAGTTGTTGCTGCTTTTGCTGAGAGGAGGGAGTTTGACAAGATTCTGGTCTACTCTAAGCAGGTTGGGTACACACCTGACTACCTCTTCCTCTTGCAAACAATTCTCCGAACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAATTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACAGCTTTTCTCCTGGACGTTTTAAAACCAAATTTACCAGAACACGGATTCCTTCAAACAAAGGTGTTGGAGATAAATCTGGTCACTTTCCCTAATGTTGCTGATGCTATTTTGGCCAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAGCTTTGTGAAAAAGCTGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGTTACCAGATATAAAACGTGTAATTGTTAATACACATGCAATTGAGCCTCAGTCACTTGTAGAATTTTTTGGTACTCTCTCACGAGAATGGGCATTAGAGTGCATGAAAGACTTATTACTGGCCAATCTTAGGGGCAATTTACAGATTATTGTGCAGGTAGCTAAAGAATATTCTGAACAATTGGGCGTTGATGGCTGCATTAAAATTTTTGAGCAGTTTAGGTCATATGAAGGGCTGTATTTTTTTCTTGGATCATATTTGAGCTCGAGCGAGGACCCCGAAATTCATTTCAAGTACATTGAGGCAGCAGCAAAGACTGGTCAAATCAAGGAGGTCGAACGTGTGACAAGAGAATCCAATTTCTATGATGCCGAAAAAACGAAGAACTTCCTAATGGAGGCTAAGCTTCCTGATGCACGACCTTTAATCAATGTTTGTGATCGATTTGGGTTTGTTCCAGATTTGACACACTACCTATACACAAACAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGATGAGTGCCCAGAAGATTTCATCAAAGGTTTGATTCTTTCTGTTCGTTCCTTGTTGCCAGTGGAACCCCTTGTAGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAGCATCTCGTGAGCGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATTATTGACAGCAACAACAACCCAGAACATTTTCTCACAAGCAACCCGTACTATGATTCTCGAGTTGTGGGCAAGTATTGTGAGAAACGCGACCCGACATTGGCAGTTGTAGCTTACAGACGAGGACAATGTGATGAAGAACTTATCAATGTCACTAGTAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGAATGGATGGTGATCTGTGGGCTAAAGTTCTTGATCCTGAAAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCTTTGCCTGAAAGCTCAAGCCCTGAACAGGTTTCTGCATCTGTTAAGGCTTTCATGACAGCCGATCTGCCTCATGAATTGATTGAACTTCTTGAGAAGATTGTCCTTCAGAACTCTGCATTTAGTGGGAACTTCAATTTGCAGAATCTTCTCATTTTGACAGCGATAAAGGCAGATTCATCCAGAGTTATGGATTATGTCAATAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCACAGTTGTATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTGTTGCTTGATAATATTCGTAGCGTTGATAGAGCTGTTGAGTTTGCTTTCAGAGTTGAAGAAGACGCTGTTTGGAGTGAGGTGGCAAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATAGAGTCATTTATACGAGCAGATGATACTACACAATTTTTGGATGTTATCCGTGCAGCTGAAGATGCCAATGTTTACCATGACTTGGTCAAATATTTGTTAATGGTAAGGCAGAAGGCAAAAGAACCAAAGGTTGACGGCGAGCTCATTTACGCATATGCAAAGATTGATAGGCTTAGTGACATTGAGGAGTTCATTCTGATGCCAAATGTTGCTAATTTGCAAAATGTTGGGGACCGGTTGTACGACGAAGCATTGTACGAGGCTGCAAAAATCATATTTTCCTTTATATCTAACTGGGCCAAGTTGGCTATTACATTGGTCAAGTTACAACAGTTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAATAGCTCCAAAACATGGAAAGAAGTTTGTTTTGCTTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGATGAGGTCAGTGAATATTACCAAAATAGAGGTTACTTCAATGAGTTAATATCTCTGATGGAGAGCGGTTTAGGGTTAGAACGAGCTCATATGGGCATCTTCACTGAGTTAGGAGTTCTTTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATCCCAAAGCTCATAAGAGCATGTGATGAACAACAGCATTGGAAAGAATTGACCTTTTTGTATATCCAATATGATGAGTTTGATAATGCCGCAACTACTATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGCTGTCAAAGTTGCTAATGTTGAGTTGTCTTACAAGGCTGTTCACTTCTATTTGGAAGAACATCCTGATCTCATCAATGATATTCTGAATGTCCTTGCACTTCGCGTGGACCACGCTCGGGTTGTTGACATCATGCGCAAGGCTGGTCACCTCCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTGTCTGCTGTAAATGAAGCCCTGAACGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTACATGATAATTTTGATCAAATAGGCCTTGCACAAAAGATTGAAAAGCATGAGCTTGTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGACGATGGAAGCAGTCCATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCTTCACAATCTGGCGAGCGTGAACTTGCCGAAGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCGTGTCTATTCGTTTGCTATGATTTAATACGGGCAGATGTTGTTCTCGAATTAGCTTGGATGCACAACATGATCGACTTTGCCTTCCCATACCTCTTACAGTTTATCCGTGAGTACACCGGCAAAGTGGATGAACTAGTGAAGGACAGAATTGAAGCACAAAATGAAGTAAAGTCTAAAGAGAAAGAAGAAAAGGATGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTACCTGCACCGCCTGGAATGGGAGGACCAGGTTATGGAGGAAGCTATGCGCCTCCCCCTCCGGTGGGTGGAATGGGGATGCCCCAAATGCCTCCTTTTGGGATGCCACCCATGGGTAGTAGTTACTAA | 5115 | 0.4221 | MAAANAPIAMKEVLTLPSVGINSQFITFTHVTMESDKYICVRETSPQNSVVIVDMSMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKTKMKSHQMPEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKIFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVSGNENPSVLIAFASKTLNAGQVISKLHVIELGAQPGKPSFSKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFSQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILVYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYSEQLGVDGCIKIFEQFRSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTSNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTSKNSLFKLQARYVVERMDGDLWAKVLDPENEYRRQLIDQVVSTALPESSSPEQVSASVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIRSVDRAVEFAFRVEEDAVWSEVAKAQLREGLVSDAIESFIRADDTTQFLDVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDGELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFSFISNWAKLAITLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLDEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTFLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELSYKAVHFYLEEHPDLINDILNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELVEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDRIEAQNEVKSKEKEEKDVVAQQNMYAQLLPLALPAPPGMGGPGYGGSYAPPPPVGGMGMPQMPPFGMPPMGSSY | 1704 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1288 | 1434 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Coils | Coil | 1477 | 1497 | - | - | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1437 | 1580 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 1142 | 1283 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 1437 | 1596 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 551 | 693 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 1288 | 1434 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 847 | 986 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 993 | 1138 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SMART | CLH_2 | 700 | 842 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Clathrin propeller repeat | 20 | 55 | IPR022365 | - | |
| Trre9g04370 | 1704 | Pfam | Clathrin propeller repeat | 154 | 197 | IPR022365 | - | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 1542 | 1638 | - | - | |
| Trre9g04370 | 1704 | Pfam | Clathrin, heavy-chain linker | 344 | 367 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 902 | 1053 | - | - | |
| Trre9g04370 | 1704 | SUPERFAMILY | ARM repeat | 457 | 793 | IPR016024 | - | |
| Trre9g04370 | 1704 | PIRSF | CHC | 3 | 1675 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Trre9g04370 | 1704 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 5 | 343 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 847 | 986 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 993 | 1138 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | SUPERFAMILY | ARM repeat | 1196 | 1531 | IPR016024 | - | |
| Trre9g04370 | 1704 | Gene3D | - | 1 | 377 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Trre9g04370 | 1704 | SUPERFAMILY | ARM repeat | 901 | 1066 | IPR016024 | - | |
| Trre9g04370 | 1704 | Coils | Coil | 1617 | 1644 | - | - | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 1197 | 1536 | - | - | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 459 | 787 | - | - | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 1054 | 1196 | - | - | |
| Trre9g04370 | 1704 | SUPERFAMILY | ARM repeat | 345 | 500 | IPR016024 | - | |
| Trre9g04370 | 1704 | Pfam | Clathrin-H-link | 369 | 434 | - | - | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 700 | 842 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | FunFam | Clathrin heavy chain | 1 | 377 | - | - | |
| Trre9g04370 | 1704 | Gene3D | - | 1542 | 1638 | - | - | |
| Trre9g04370 | 1704 | Gene3D | Tetratricopeptide repeat domain | 902 | 1055 | IPR011990 | GO:0005515 | |
| Trre9g04370 | 1704 | Gene3D | Tetratricopeptide repeat domain | 1056 | 1196 | IPR011990 | GO:0005515 | |
| Trre9g04370 | 1704 | Gene3D | Tetratricopeptide repeat domain | 1197 | 1536 | IPR011990 | GO:0005515 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 1293 | 1431 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 850 | 983 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 1146 | 1281 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 701 | 840 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 1440 | 1579 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 993 | 1131 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | Pfam | Region in Clathrin and VPS | 555 | 690 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1142 | 1283 | IPR000547 | GO:0006886|GO:0016192 | |
| Trre9g04370 | 1704 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 4 | 1498 | - | - | |
| Trre9g04370 | 1704 | SUPERFAMILY | ARM repeat | 1051 | 1195 | IPR016024 | - | |
| Trre9g04370 | 1704 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 551 | 697 | IPR000547 | GO:0006886|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre9g04370 | Trre-Chr9 | 51531898 | 51544013 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre9g04370 | K04646 | - | gmx:100786617 | 3145.53 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g03459 | 5 | 31608258 | 31608884 | Trre9g04370 | 9 | 51531898 | 51544013 | ECH | |
| Trre9g04370 | 9 | 51531898 | 51544013 | Trre9g04370 | 9 | 51531898 | 51544013 | ECH | |
| Trre5g03459 | 5 | 31608258 | 31608884 | Trre9g04370 | 9 | 51531898 | 51544013 | PCT |