Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04364 ATGTGCAGTGGTTCAAAAAGTAAACTTTCTTCATCAGATTACAACATGGAGGGTAAGCTTCAGAAGGGTATCCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTGAATGAAGAAGGTTTTTGGTATGGTAGAAGAATCGGATCGAAGAAGATGGAATCCGAAAAGAGGACTCCCCTCATGATTGCTTCCTTGTTTGGAAGCACTAAGGTGCTTAAGTATATTGTTTTGACAGGAAAGGTTGATGTCAACCGAGTGTGTGGCTCCGATATGGTCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAATTTTCGCTTGAGGTTGTCAAGCTTTTGCTTGATGCTGGAGCAGATACTGATTGTCTTGATGTTAATGGAAACAAACCGGTTGATCTGATTGCGCCTGCTTTTAATACTTCGTCCAAATCGCGTAGGAAGGTGTTGGAGATGTTTTTGAGAGGCGAGGTTAGTGCTGAACTCGTCCAAGGGGAGATGGATGCTTGTTTCTCATTGAAGAAAGATGGTGCTGATAAGAAAGAATATCCTATTGATATATCGTTGCCGGACATAAACAACGGTGTATATGGATCAGATGACTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCAGGTGAGAACGCAAGGAGAAGAGACCCAAAGAAATATCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGATCCTGCCAGAAAGGGGATTCATGCGAGTATGCGCACGGTGTTTTCGAGTCATGGCTACATCCTGCACAGTACCGAACAAGGCTTTGCAAAGACGAGACTGGCTGCAACAGGAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGTTGCGCCCTGTGTATGCTTCCACCGGATCAGCTATGCCTTCACCGAAGTCATATTCAGCTAGTGCAATGGACATGACATCGATGAGTCCGCTGTCTCTCAGCTCCTCATCTTTGCCTATGTCAACCGTTTCAACACCGCCCATGTCGCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAGATTAACCTCACTCCACCATCATTGCAGCTCCCAGGTAGCCGGTTGAAGAGTGCTTTGAGTGCTAGGGATATGGATCTTGAGATGGAACTGCTCGGTCTTGACAGTCCTCGTCGTCAACAGCAACAGCAGCTTCAACAACAACAATTAATTGAAGAGATTGCCAGAATCTCTTCCCCATCTTTCCGGAACAGCGAATTCAACAGGATTGCTGATTTGAATCCGACTAACCTTGATGACCTATTAGCATCTGCTGATCCTAATTTACTCTCTCAGCTACATGGACTTTCCATGCAGCCTTCAACACCCACCCAACAACAGATGCAATCTCCAAGTGCGATGCAGATGCGCCAAAACATGAACATGAACATGAGCCAAAACATGAACATGAACCACCTTCGCGCAAGTTATCCATCCAATAATATGCCATCCTCTCCAGTGAGGAAACCCTCAGCATATGGATTTGATTCATCAGCTGCCGTGGCAGCTGCAGTGATGAATTCCAGGTCATCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGCGGTGCTGCAAACCACCATCACGGACTGTCTTCGCCTTCCAACCCTTCCAGCAGGATGTCCTCTGGCCTTCCAGATTGGGGTTCCCCCACCGGAAAACTCGACTGGGGTGTAAATGGAGATGATCTTAACAAGCTGAGAAAATCTGCTTCTTTTGGGTTCAGAAACAACGCGGCAACACCAACCCCATCCCAACATGCTGAGCCTGATGTCTCTTGGGTTAATTCATTGGTCAAGGATGTTCCCTCCGAGAATACCGACATATACGGTGCTGAGAATATGCGGCAGCAATATGATCTGAGTAGAGAGATGCTTCCACCATGGGTGGAACAGATGTACATAGAGCAGGAGCAGATGGTAGCATGA 2061 0.4658 MCSGSKSKLSSSDYNMEGKLQKGIHNSSILLELSASDDFDAFKREVDEKGLDVNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTKVLKYIVLTGKVDVNRVCGSDMVTALHCAVAGGSEFSLEVVKLLLDAGADTDCLDVNGNKPVDLIAPAFNTSSKSRRKVLEMFLRGEVSAELVQGEMDACFSLKKDGADKKEYPIDISLPDINNGVYGSDDFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNLWQNKINLTPPSLQLPGSRLKSALSARDMDLEMELLGLDSPRRQQQQQLQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQQMQSPSAMQMRQNMNMNMSQNMNMNHLRASYPSNNMPSSPVRKPSAYGFDSSAAVAAAVMNSRSSAFAKQRSQSFIDRGAANHHHGLSSPSNPSSRMSSGLPDWGSPTGKLDWGVNGDDLNKLRKSASFGFRNNAATPTPSQHAEPDVSWVNSLVKDVPSENTDIYGAENMRQQYDLSREMLPPWVEQMYIEQEQMVA 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04364 686 Gene3D - 258 320 - -
Trre9g04364 686 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Trre9g04364 686 PANTHER UNKEMPT FAMILY MEMBER 32 646 IPR045234 -
Trre9g04364 686 FunFam Zinc finger CCCH domain-containing protein 66 215 283 - -
Trre9g04364 686 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Trre9g04364 686 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Trre9g04364 686 MobiDBLite consensus disorder prediction 569 593 - -
Trre9g04364 686 SMART ANK_2a 107 139 IPR002110 GO:0005515
Trre9g04364 686 SMART ANK_2a 72 102 IPR002110 GO:0005515
Trre9g04364 686 MobiDBLite consensus disorder prediction 346 386 - -
Trre9g04364 686 MobiDBLite consensus disorder prediction 573 590 - -
Trre9g04364 686 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Trre9g04364 686 SUPERFAMILY Ankyrin repeat 24 161 IPR036770 -
Trre9g04364 686 Pfam Ankyrin repeats (3 copies) 70 138 IPR002110 GO:0005515
Trre9g04364 686 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Trre9g04364 686 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Trre9g04364 686 Gene3D - 25 173 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04364 Trre-Chr9 51458295 51460355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04364 25 681 C2H2 Transcription Factor Family AT5G12850 39.398 1.28e-141 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre9g04364 Ank_2 1.3e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04364 - - gmx:100783376 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04364 9 51458295 51460355 Trre9g04364 9 51458295 51460355 ECH