Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04344 ATGCCTAATGGGAGTCTGGAAACGTTGTTGCACGATAACGAAGTGTCTGAAAATGATATTCTCAGTCTCCCACAAAGGATAGACATTGCTCTTGATGTTGCTCATGCACTTGATTATCTACACAACGATACAGAGCAAGCCGTAGTTCACTGTGATATTAAGCCAAGCAACGTACTTCTTGACGATGACCTTGTAGCCCACTTAGGAGACTTCGGCTTAGCTAGGCTCATTCATGGAGCCACAGGACAATATTCAAATAATGATCAAGTTATTTCCTCCACAATTAAGGGAACTATAGGATATGTTCCTCCTGAATATGGAGCAGGTGGTCCAGTATCACCACAAGGAGATATCTACAGCTATGGGATTCTTCTCTTAGAAATGCTTACTGGAAAGAGACCAACAGATGACATGATTTGTGAGAGTCAAAGTCTACATGAATTGTGTAAGATGAAAATTTCAGAAGGAATCCTTGAGATAGTAGATTCACATTTGCTTTCGCCATTTGTTGAAGATCAAACAGGAATTGTGGAAAGCAAAATTAAAAATTGCTTGGTGATGTTTGCTGGAATTGGAGTTGCATGTTCAGAAGAGTTTCTTGCTCATCGAATGCCGATAAAAGATGTTATAGTTAAGCTAAATGAAATCAAATCAAAGTTTCTATGCTAG 669 0.3901 MPNGSLETLLHDNEVSENDILSLPQRIDIALDVAHALDYLHNDTEQAVVHCDIKPSNVLLDDDLVAHLGDFGLARLIHGATGQYSNNDQVISSTIKGTIGYVPPEYGAGGPVSPQGDIYSYGILLLEMLTGKRPTDDMICESQSLHELCKMKISEGILEIVDSHLLSPFVEDQTGIVESKIKNCLVMFAGIGVACSEEFLAHRMPIKDVIVKLNEIKSKFLC 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04344 222 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 222 - -
Trre9g04344 222 SMART serkin_6 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04344 222 SUPERFAMILY Protein kinase-like (PK-like) 1 164 IPR011009 -
Trre9g04344 222 Pfam Protein kinase domain 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04344 222 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 218 - -
Trre9g04344 222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Trre9g04344 222 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04344 222 Gene3D Transferase(Phosphotransferase) domain 1 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04344 Trre-Chr9 51243382 51244272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04344 1 221 Receptor kinase-like Gene Family AT3G47570 45.333 1.54e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g04344 Pkinase 4.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04344 - - mtr:11438431 348.977