Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04343 ATGGCGGAATGTGAAACTCTTGGAAAGATGAAACACAGGAATCTTGTCAAGATCCTAACTTGTTGTTCAAGTGTTGATTATAAGGGTGAAGAATTCAAGGCTATTGTTTTTGAGTTCATGCCGAATGGGAGTCTGGAAAAGTTGTTGCACGATAATGAAGGGTCGTCTGAAAATGATATTCTCAGTCTCCTGCAGCTGGTAGACATTGCTCTTGATGTAGCGCAAGCATTGGATTATCTTCACAACGATACTGAGCATGTTGTTGTTCATTGTGATATTAAGCCGAGCAACGTACTTCTTGACGATGACCTTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGACTCATTCATGGAGCCACAAGACATTCAAGTAAAGACCAAGTTAATTCCTCTGCAATTAAGGGAACTGTCGGATATGTTCCACCTGAGTATGGAGCAGGTGGTCAAGTATCACCTCAAGGAGATTTATATAGCTATGGGATTCTTTTATTAGAAATGCTCACCGGAAAGAGACCAACAGATAACATGTTTTTTGAGAGTTTAAGTCTGCATGAATTCTGTAAGATGAAAATCCCAGAAGGAATCTTTGAGATAGTAAATTCACAATTGCTTTTGCAATTTGCTGAAGATCAGACAGGGATTGTGGAAAACAAGATTAGGATGTGTTTGGTGAAGTTTGCTAGTATTGGAGTTGCATGTTCTGAAGAATTCCCTACTCATCGGATGCCGATAAAAGATGTTATAGTTAAGTTGAATGAAATCAAATCAAAGCTTACATCCTAG 786 0.3931 MAECETLGKMKHRNLVKILTCCSSVDYKGEEFKAIVFEFMPNGSLEKLLHDNEGSSENDILSLLQLVDIALDVAQALDYLHNDTEHVVVHCDIKPSNVLLDDDLVAHLGDFGLARLIHGATRHSSKDQVNSSAIKGTVGYVPPEYGAGGQVSPQGDLYSYGILLLEMLTGKRPTDNMFFESLSLHEFCKMKIPEGIFEIVNSQLLLQFAEDQTGIVENKIRMCLVKFASIGVACSEEFPTHRMPIKDVIVKLNEIKSKLTS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04343 261 ProSiteProfiles Protein kinase domain profile. 1 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04343 261 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 40 261 - -
Trre9g04343 261 Gene3D Phosphorylase Kinase; domain 1 1 43 - -
Trre9g04343 261 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 257 - -
Trre9g04343 261 SUPERFAMILY Protein kinase-like (PK-like) 2 250 IPR011009 -
Trre9g04343 261 Pfam Protein kinase domain 2 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04343 261 Gene3D Transferase(Phosphotransferase) domain 1 44 261 - -
Trre9g04343 261 PIRSF ILK 205 261 - -
Trre9g04343 261 PIRSF ILK 1 204 - -
Trre9g04343 261 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Trre9g04343 261 SMART serkin_6 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04343 Trre-Chr9 51225848 51226847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04343 1 259 Receptor kinase-like Gene Family AT3G47580 45.627 3.10e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre9g04343 Pkinase 7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04343 - - mtr:11438431 417.542