Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04332 ATGGCTCTACAACAACCAAGCCGTGTGAATCCAAAAATTTGGCAGAGTGTTGCCGGCATCAAAATTCCAAAACTACACTCCAAAGTTTACTATTTTCCACTAGGGCACTTAGAACATGCAAACCCTACCCCAAACACTGAATCACTTTCACTTATCAATAGTTACCGTCCATTCATTCCATGTATCATCTCATCCGTTGATCTCCTCGCCGATCCTAAGACCGACGAGGTCTTCACCAAACTGCTCCTAACTCCCGTCATTGACGGTAGTACAGTTGAACCTCCTCCTGAGGTTCATGATGATGATGGAGGTGGTAATGTTGTTTATTTGGGAAAGACTCTCACTCAATCTGATGCTAAGAACGGCGGTGCATTCTCCGTACCAACCGAATGTGCCAAGATGATATTCCCTCCGCTTGATTTGAATGCAGAATTGCCACGTCAGGAACTCTCCATCACCGATATTCACGGTGCTATATGGGAGTTTCGTCATGTCTATCGTGGGAATCCAAAGCGAAACATGTTCACCCATAACTGGAGTCCGTTTGTTGACAAGAAGAAACTCGTCGGTGGTGATTCCCTTGTTTTTATGAAAAATTCGGCCGGAAATATCTATGTTGGAATCCGTCGGGTAAAAAAGTTTGGTTCCGCCGCTGTAATGCAAAAGAAAGAATTGGTGGTTATGGAGGCAGCGAAATTGGCGGAAAAGAACGAGGCGTTTGAAGTTGTTTACTATCCGACGGCCGGTGATAATTTTGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGATTAATTGGAATTGTGGAATGAGAGTTAAACGCTCTTTGAAGAATGATCTTGATCTTGATCTTGATTCTACAATAGAGTTGCAGCATGGGTCAATCACTAATATTTCTGCTCATTCTAATCAACCATGGCGCATGCTTCAGGTTAAATGGGATGAAGCTGAAGACTCGGAAAATACAACACAAGTCAGTCCTTGGCAGATTGAATATAATTCCAACATATCTTCATTGCATTTGCGATCTCGCCCAACAAAAAAGCGTAAAGTTGCTAAAGATTCTACTTTACCAAGTGATATACAAGGAGATTCCTCCATTCCAATGATAAAGTTCCAACATTCACCAAAGGAAAAACGCCACCTAAAAAATACAATTGAGAATAATGGATTCATGAATCAATCAACAACGTTAAATTGTGATACTTTATCGGATGGTACTATACAGGGAGCCAGGCAAAATTCTTTTTCGACAACAAAAGTTGTTGACGCGAACAATTGTAGTTCCAAAAAAGTTACTCGTTCAATTAAGCTATTTGGTGCTAACATAGAAGTTGAAAGGGATTTGCTTGATTCTGAAATCAAGGAAGATGATGGTTGTAAGAGCTGCAATGAAATTGAAAGCAACGACATATAA 1419 0.4094 MALQQPSRVNPKIWQSVAGIKIPKLHSKVYYFPLGHLEHANPTPNTESLSLINSYRPFIPCIISSVDLLADPKTDEVFTKLLLTPVIDGSTVEPPPEVHDDDGGGNVVYLGKTLTQSDAKNGGAFSVPTECAKMIFPPLDLNAELPRQELSITDIHGAIWEFRHVYRGNPKRNMFTHNWSPFVDKKKLVGGDSLVFMKNSAGNIYVGIRRVKKFGSAAVMQKKELVVMEAAKLAEKNEAFEVVYYPTAGDNFVVDAKVVEDAMKINWNCGMRVKRSLKNDLDLDLDSTIELQHGSITNISAHSNQPWRMLQVKWDEAEDSENTTQVSPWQIEYNSNISSLHLRSRPTKKRKVAKDSTLPSDIQGDSSIPMIKFQHSPKEKRHLKNTIENNGFMNQSTTLNCDTLSDGTIQGARQNSFSTTKVVDANNCSSKKVTRSIKLFGANIEVERDLLDSEIKEDDGCKSCNEIESNDI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04332 472 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Trre9g04332 472 CDD B3_DNA 112 210 IPR003340 GO:0003677
Trre9g04332 472 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 445 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre9g04332 472 Pfam B3 DNA binding domain 112 210 IPR003340 GO:0003677
Trre9g04332 472 MobiDBLite consensus disorder prediction 344 368 - -
Trre9g04332 472 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Trre9g04332 472 Gene3D - 109 211 IPR015300 -
Trre9g04332 472 SMART B3_2 110 212 IPR003340 GO:0003677
Trre9g04332 472 Pfam Auxin response factor 230 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre9g04332 472 Gene3D - 267 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04332 Trre-Chr9 51130338 51132320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04332 9 354 B3 DNA Binding Superfamily AT1G77850 36.990 1.46e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre9g04332 B3 3.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04332 - - mtr:11409684 431.795