Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04331 ATGTTTCAACCACAACCTCGCCGTGTAGATCCAAAACTCTGGCAGAGTTGTGCCGGTGACTCAATCAAAATACCAAAACTACATTCAAAAGTTTACTATTTTCCATTAGGTCACTTAGAACATGCTAACCCTTCTCCAAACACTCAATCACTTTCCCTTATCGATCATTACCGTTCGTTCATTCCTTGTATCATCTCGGCCGTTGATCTCCTCGCTGATCCACACACCGATGAAGTCTTCGCCAAATTGCTACTTACTCCTATAACTGATGGCACCATTGAATCTCCCGACGTTCCTCGTGAAGATCAAGAAAACAACGATAAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATGCTAGTAACGGTGGTGGATTCTCCGTACTTCGTGAGTGTGCTGACAAGATCTTCCCGCCCCTTGATTTAAATGCCAAACCGGCACCGGTTCAACAACTTTTCTTTACCGATGTTCACGGTGAAGAGTGGAAGTTTCGTCACATATTCAGTGGGTTTCCCTTGCGAAACCTAATCACTACCGGCTGGAGTAAGTTTGTGGACAAGAAGAAACTCGTTGTTGGTGATTCTTTAGTTTTCTTGAAAAATTCAACCGGGAGGATCTTTGTCGGAATTCGTAGGAAGTTCGATGCCTCAAGAAGCGGGAAAATAACAGAGAAAGCGGTCATGGAGGCAGTAGAATTGGCGGAGAAGAACAAGGCGTTTGAAGTTGTATACTATCCGACAGTTGGTGTTGGTGATAATTTCGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGGTTAATTGGAATTGTGGAATGAGAGTTAAACTTCCTTTGAAGAATGATGATTCTTCAAAGCGAACAATGATTGGGACAATCTCTAATCTCTACGATCCTTCTAATCGTCCATGGCGCATGCTTGAGGTCAAATGGGATGAACCTAAAGTCTTGGAAAATACAACGCGACTTAGAGTTGATCCGGGCTTTTCCTTATCAAGCAGTAAAGAGCGAGACTCTCATCCTAATGGCATTCAGGGAGTCAAGCAATATCCTTTTCCCGAATCAACTTCTTCCAACATTGTGAATGATAAGGAAAATGATTTCTTTCGGAATAAAACCGATGAATTTGCGGGTACACACAACTGCAACACCAAAAAAGTTAGTCCCAATTCAATTAAGCTATTTGGTAAGACCATAGAGTTATCTGTTGGAAGCAATTTACCTGATTCTGATATCAAGGGAGATGATGGTTGTAAGGGCTGCAGTGAAATTGAAGGCATTAACAAAACTTGCACTAAAATAGCTCAATAG 1314 0.4224 MFQPQPRRVDPKLWQSCAGDSIKIPKLHSKVYYFPLGHLEHANPSPNTQSLSLIDHYRSFIPCIISAVDLLADPHTDEVFAKLLLTPITDGTIESPDVPREDQENNDKVVSSFKTLTRSDASNGGGFSVLRECADKIFPPLDLNAKPAPVQQLFFTDVHGEEWKFRHIFSGFPLRNLITTGWSKFVDKKKLVVGDSLVFLKNSTGRIFVGIRRKFDASRSGKITEKAVMEAVELAEKNKAFEVVYYPTVGVGDNFVVDAKVVEDAMKVNWNCGMRVKLPLKNDDSSKRTMIGTISNLYDPSNRPWRMLEVKWDEPKVLENTTRLRVDPGFSLSSSKERDSHPNGIQGVKQYPFPESTSSNIVNDKENDFFRNKTDEFAGTHNCNTKKVSPNSIKLFGKTIELSVGSNLPDSDIKGDDGCKGCSEIEGINKTCTKIAQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04331 437 SMART B3_2 112 215 IPR003340 GO:0003677
Trre9g04331 437 Gene3D - 111 215 IPR015300 -
Trre9g04331 437 Gene3D - 269 328 - -
Trre9g04331 437 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Trre9g04331 437 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 325 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre9g04331 437 FunFam Auxin response factor 111 215 - -
Trre9g04331 437 Pfam Auxin response factor 231 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre9g04331 437 MobiDBLite consensus disorder prediction 329 362 - -
Trre9g04331 437 SUPERFAMILY DNA-binding pseudobarrel domain 107 214 IPR015300 -
Trre9g04331 437 CDD B3_DNA 113 213 IPR003340 GO:0003677
Trre9g04331 437 ProSiteProfiles B3 DNA-binding domain profile. 152 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04331 Trre-Chr9 51124462 51126032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04331 7 324 B3 DNA Binding Superfamily AT1G77850 42.466 3.66e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre9g04331 B3 6.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04331 - - mtr:11409684 422.165