Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04330 ATGTTTCAACCACAACCTCGCCGTGTAGATCCAAAACTCTGGCAGAGTTGTGCCGGTGACTCAATCAAAATACCAAAACTACATTCAAAAGTTTACTATTTTCCATTAGGTCACTTAGAACATGCTAACCCTTCTCCAAACACTCAATCACTTTCCCTTATCGATCATTACCGTTCGTTCATTCCTTGTATCATCTCGGCCGTTGATCTCCTCGCTGATCCACACACCGATGAAGTCTTCGCCAAATTGCTACTTACTCCTATAACTGATGGCACCATTGAATCTCCCGACGTTCCTCGTGAAGATCAAGAAAACAACGATAAGGTTGTTTCGTCTTTCAAGACTCTCACCCGATCTGATGCTAGTAACGGTGGTGGATTCTCCGTACTTCGTGAGTGTGCTGACAAGATCTTCCCGCCCCTTGATTTAAATGCCAAACCGGCACCGGTTCAACAACTTTTCTTTACCGATGTTCACGGTGAAGAGTGGAAGTTTCGTCACATATTCAGTGGGTTTCCCTTGCGAAACCTAATCACTACCGGCTGGAGTAAGTTTGTGGACAAGAAGAAACTCGTTGTTGGTGATTCTTTAGTTTTCTTGAAAAATTCAACCGGGAGGATCTTTGTCGGAATTCGTAGGAAGTTCGATGCCTCAAGAAGCGGGAAAATAACAGAGAAAGCGGTCATGGAGGCAGTAGAATTGGCGGAGAAGAACAAGGCGTTTGAAGTTGTATACTATCCGACAGTTGGTGTTGGTGATAATTTCGTGGTGGATGCTAAGGTTGTGGAGGATGCAATGAAGGTTAATTGGAATTGTGGAATGAGAGTTAAACTTCCTTTGAAGAATGATGATTCTTCAAAGCGAACAATGATTGGGACAATCTCTAATCTCTACGATCCTTCTAATCGTCCATGGCGCATGCTTGAGGTCAAATGGGATGAACCTAAAGTCTTGGAAAATACAACGCGAGTCAATCCTTGGACGGTTGAACCTATTTTCGACATACCTGGATCGAATCTACATTTTCCCCGAGCAAAAAAGCTTAGAGTTGATCCGGGCTTTTCCTTATCAAGCAGTAAAGAGCGAGACTCTCATCCTAATGGCATTCAGGGAGTCAAGCAATATCCTTTTCCCGAATCAACTTCTTCCAACATTGTGAATGATAAGGAAAATGATTTCTTTCGGAATAAAACCGATGAATTTGCGGGTACACACAACTGCAACACCAAAAAAGTTAGTCCCAATTCAATTAAGCTATTTGGTAAGACCATAGAGTTATCTGTTGGAAGCAATTTACCTGATTCTGATATCAAGGGAGATGATGGTTGTAAGGGCTGCAGTGAAATTGAAGGCATTAACAAAACTTGCACTAAAATAGCTCAATAG 1386 0.4228 MFQPQPRRVDPKLWQSCAGDSIKIPKLHSKVYYFPLGHLEHANPSPNTQSLSLIDHYRSFIPCIISAVDLLADPHTDEVFAKLLLTPITDGTIESPDVPREDQENNDKVVSSFKTLTRSDASNGGGFSVLRECADKIFPPLDLNAKPAPVQQLFFTDVHGEEWKFRHIFSGFPLRNLITTGWSKFVDKKKLVVGDSLVFLKNSTGRIFVGIRRKFDASRSGKITEKAVMEAVELAEKNKAFEVVYYPTVGVGDNFVVDAKVVEDAMKVNWNCGMRVKLPLKNDDSSKRTMIGTISNLYDPSNRPWRMLEVKWDEPKVLENTTRVNPWTVEPIFDIPGSNLHFPRAKKLRVDPGFSLSSSKERDSHPNGIQGVKQYPFPESTSSNIVNDKENDFFRNKTDEFAGTHNCNTKKVSPNSIKLFGKTIELSVGSNLPDSDIKGDDGCKGCSEIEGINKTCTKIAQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04330 461 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Trre9g04330 461 MobiDBLite consensus disorder prediction 354 382 - -
Trre9g04330 461 FunFam Auxin response factor 111 215 - -
Trre9g04330 461 Gene3D - 269 335 - -
Trre9g04330 461 SMART B3_2 112 215 IPR003340 GO:0003677
Trre9g04330 461 Pfam Auxin response factor 231 308 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre9g04330 461 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 385 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre9g04330 461 SUPERFAMILY DNA-binding pseudobarrel domain 107 214 IPR015300 -
Trre9g04330 461 CDD B3_DNA 113 213 IPR003340 GO:0003677
Trre9g04330 461 ProSiteProfiles B3 DNA-binding domain profile. 152 215 IPR003340 GO:0003677
Trre9g04330 461 Gene3D - 111 215 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04330 Trre-Chr9 51124462 51126032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04330 7 450 B3 DNA Binding Superfamily AT1G77850 36.266 2.08e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre9g04330 B3 7.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04330 - - mtr:11409684 456.062