Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04325 ATGGAAGAGAGCATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAAAAGCAGCAGTAGCAGCACTGGCACAAAGTGTGGTCGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTGAACTTTTCAGAGCAGGGCTCAGAACTCCAAGTACTGATCAAATTCAAAAAATATCCAATCAATTAAGTTTTTATGGTAAGATAGAGAGCAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGGGAAAGACAAAAACGTAGGAAGGTTTCTTTTGATGAGGACAAGGATATCTTCATTCATAGAGATCACAACTCTATGATGAATGCTTCAACACAAAGGTTTGTTGAGATGTACTCAGAGCCTGATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCATTTGGTGAATCAGAATCATCAGAGAAGCTGAATATGCATATAAATGAATGCAGGGAAAATAATACAATGTTTGCATACACATGTACAATGGGAGAACAAATGGAACATCCACCATTAGACTTGCGGTTGAGCTTTGTTTAG 552 0.3786 MEESMSGFCMRSSGSKSSSSSTGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDEDKDIFIHRDHNSMMNASTQRFVEMYSEPDRVIETLELFPLNSFGESESSEKLNMHINECRENNTMFAYTCTMGEQMEHPPLDLRLSFV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04325 183 Gene3D - 7 92 - -
Trre9g04325 183 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Trre9g04325 183 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g04325 183 FunFam WUSCHEL-related homeobox 11 25 93 - -
Trre9g04325 183 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Trre9g04325 183 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Trre9g04325 183 SMART HOX_1 24 91 IPR001356 GO:0003677
Trre9g04325 183 CDD homeodomain 28 88 IPR001356 GO:0003677
Trre9g04325 183 MobiDBLite consensus disorder prediction 8 29 - -
Trre9g04325 183 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 102 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04325 Trre-Chr9 51078678 51079917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04325 1 183 Wox Gene Family AT3G11260 54.974 1.09e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre9g04325 Homeodomain 5.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04325 - - cam:101494967 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04325 9 51078678 51079917 Trre9g04325 9 51078678 51079917 ECH