Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04322 ATGCCTTCTTCTTCTCCTACCTTGTTCTCAAAATGTACTATAATCCCTGACCAAAAATCCACTATTGGAAACCTTAAACTCTCTGTTTCAGATCTTCCTATGCTTTCTTGTCACTACATCCAAAAAGGTTGTCTCTTCACAAAACCATCAATTCCCTTTCATAATCTAATTCCTATCATCAAAACTGCTCTCTCTCGAACTCTCTCAATCTTTCCACCTTTGGCCGGTCGTTTAACGACCGACTCTGACGGTTACGTTTACATAACCTGCAACGACGCCGGTGTCGATTTCATCACTGCCAATGCCACTAAACTCTACATCCATGATCTATTATCAACCACAGATGTCAATGAGTCTTTCAAAGAATTTTTTACTTTTGATCGGAAAGTCAGTTACAGCGGCCATTATTCTCCAATAATGGCCGTTCAGGTAACTGAACTTTCCGATGGTATTTTTATCGGCTGTGCCGTTAATCATGCCGTCACTGACGGTACTTCCTTCTGGAATTTCTTCAATACATTTGCACAATTATGCAGAGGAGCAAACAAATGTATCAGAAATTCTCCAAGCTTCCGTCGTGACTCTGTTTTAATCTCAAACGCCGTTCTCCGGTTACCGGAGGGAGGTCCGGTGGTGACATTCAACGCCGACGCACCGATAAGAGAAAGAATCTTTAGCTTCAGCAGAGAAGCAATTCAGAAACTCAAAGCCAGAGCTAATAACCGTCGCTGGACGGAAAATAACAACGCCGTTGAATTGATGCAGAAACACATGAACGATCACTATAACAATAACAACAATAATCAGAAAGAAAACGGTAACGGTAAGGTAGCGGCGTTAATTGAGAATTGGTTTAAGAGCAATGTTAATACAAAACAACAAACGGTTACCGTAACAGAAACAGAAACGGTTGAGATTTCATCTTTTCAATCTCTATGCGCGTTACTATGGCGTGCAGTCACGCGCGCGAGGAAATTTCATCCATCTAAAACAACTACATTTAGAATGGCGGTTAATTGTAGACACCGTGTTAAACCGGAGCTAGAATCATTTTATTTCGGAAACGCTATTCAGAGCGTTCCGACATACGCTTCCGCCGGAGATGTAATGTCTAAAGATATCCGGTGGTGTGCGGAGCAGCTGAATAAAAACGTGAAGGCGCATGATAATGGTATGGTGAGGAAGTTTGTAGAGGATTGGGAGAACAATCCTAGATGTTTTCCTTTGGGGAACCCTGATGGTGGTTCTATAACAATGGGTAGTTCACCGAGGTTTCCGATGTACGATAATGATTTTGGTTGGGGAAAACCGTTAGCGGTTAGGAGTGGGAAAGCGAATAAATTTGACGGTAAGATTTCGGCGTTTCCAGGGAGAGATGGAAGTGGGACCGTTGATTTAGAGGTTGTTTTGGCGCCAGAAACTATGGCGGGGCTTGAGAATGATGCTGAGTTTATGGTTTATGCTTCTAGGCAGTTATGA 1479 0.426 MPSSSPTLFSKCTIIPDQKSTIGNLKLSVSDLPMLSCHYIQKGCLFTKPSIPFHNLIPIIKTALSRTLSIFPPLAGRLTTDSDGYVYITCNDAGVDFITANATKLYIHDLLSTTDVNESFKEFFTFDRKVSYSGHYSPIMAVQVTELSDGIFIGCAVNHAVTDGTSFWNFFNTFAQLCRGANKCIRNSPSFRRDSVLISNAVLRLPEGGPVVTFNADAPIRERIFSFSREAIQKLKARANNRRWTENNNAVELMQKHMNDHYNNNNNNQKENGNGKVAALIENWFKSNVNTKQQTVTVTETETVEISSFQSLCALLWRAVTRARKFHPSKTTTFRMAVNCRHRVKPELESFYFGNAIQSVPTYASAGDVMSKDIRWCAEQLNKNVKAHDNGMVRKFVEDWENNPRCFPLGNPDGGSITMGSSPRFPMYDNDFGWGKPLAVRSGKANKFDGKISAFPGRDGSGTVDLEVVLAPETMAGLENDAEFMVYASRQL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04322 492 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 485 - -
Trre9g04322 492 SUPERFAMILY CoA-dependent acyltransferases 57 180 - -
Trre9g04322 492 Gene3D - 219 483 IPR023213 -
Trre9g04322 492 Pfam Transferase family 7 485 - -
Trre9g04322 492 Gene3D - 7 204 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04322 Trre-Chr9 51060540 51062018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04322 59 480 Monolignol Biosynthesis Gene Families AT5G48930 26.196 6.29e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04322 - - gmx:100500612 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02021 5 15055523 15056914 Trre9g04322 9 51060540 51062018 ECH
Trre9g04322 9 51060540 51062018 Trre9g04322 9 51060540 51062018 ECH
Trre9g04322 9 51060540 51062018 Trre5g02021 5 15055523 15056914 PCT