Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04315 ATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTCAAAAAACAGAATGGAGTAGAGAAGATAATAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTAAAGGTTGCTGAAATGATTCCTGGTAAAACTGTTTATGATGTGATTAAGCAGTATAGGGAATTGGAAGAAGATGTTTGTGAAATCGAAGCCGGAAATGTTCCGATTCCCGGTTATCTTGCTTCTTCTTTCACTTTTGAGGTTGTTGAAAATCAGAACTATGATGGATGTAAAAGAAGACATGTAACTGTTAGAGGTTCTGATCATGAAAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGCGTTTTCTGATGGGACTACTAAAGTATGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTTGTAACAAAAACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCATCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGACATTACAACTGTTACTCTAACAGAAACTTCTTCTGCATCAGAAAATAAGCAGAAAATGGGTTGGACTAGTACTCACTACAATGATGGATCACTACAAGGACAAGATCTCTATGACTGCACTTTTCATGAATCTTATGCTAAGCTGAAAGTTTCCGGTTTCGCAACGGCTTCTAGTGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTTTAA 753 0.3732 MLDSNWFVEESQKTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVYDVIKQYRELEEDVCEIEAGNVPIPGYLASSFTFEVVENQNYDGCKRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSASENKQKMGWTSTHYNDGSLQGQDLYDCTFHESYAKLKVSGFATASSDFNKGAVFGIHAL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04315 250 CDD SANT 115 159 IPR001005 -
Trre9g04315 250 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Trre9g04315 250 Pfam Myb-like DNA-binding domain 115 159 IPR001005 -
Trre9g04315 250 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 10 197 IPR043363 -
Trre9g04315 250 FunFam transcription factor MYB1R1 114 165 - -
Trre9g04315 250 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Trre9g04315 250 SMART sant 12 64 IPR001005 -
Trre9g04315 250 SMART sant 112 162 IPR001005 -
Trre9g04315 250 ProSiteProfiles SANT domain profile. 116 164 IPR017884 -
Trre9g04315 250 FunFam Transcription factor SRM1 8 75 - -
Trre9g04315 250 SUPERFAMILY Homeodomain-like 14 68 IPR009057 -
Trre9g04315 250 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 163 IPR006447 GO:0003677
Trre9g04315 250 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Trre9g04315 250 Gene3D - 114 165 - -
Trre9g04315 250 SUPERFAMILY Homeodomain-like 110 164 IPR009057 -
Trre9g04315 250 CDD SANT 15 61 IPR001005 -
Trre9g04315 250 Gene3D - 8 75 - -
Trre9g04315 250 ProSiteProfiles SANT domain profile. 11 65 IPR017884 -
Trre9g04315 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04315 Trre-Chr9 50972277 50973675 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04315 Myb_DNA-binding 9.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04315 - - cam:101492144 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01578 13 12833069 12834711 Trre9g04315 9 50972277 50973675 ECH
Trre9g04315 9 50972277 50973675 Trre9g04315 9 50972277 50973675 ECH