Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04314 ATGGATTTAGAAACCCTTTATTCTCCTTATTCTATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTCAAAAAACAGAATGGAGTAGAGAAGATAATAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCAGATAGATGGTTAAAGGTTGCTGAAATGATTCCTGGTAAAACTGTTTATGATGTGATTAAGCAGTATAGGGAATTGGAAGAAGATGTTTGTGAAATCGAAGCCGGAAATGTTCCGATTCCCGGTTATCTTGCTTCTTCTTTCACTTTTGAGGTTGTTGAAAATCAGAACTATGATGGATGTAAAAGAAGACATGTAACTGTTAGAGGTTCTGATCATGAAAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGGCGTTTTCTGATGGGACTACTAAAGTATGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTTGTAACAAAAACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCATCTGGAGGCAAAGATAAAAGAAGACCAAGCATTCATGACATTACAACTGTTACTCTAACAGAAACTTCTTCTGCATCAGAAAATAAGCAGAAAATGGGTTGGACTAGTACTCACTACAATGATGGATCACTACAAGGACAAGATCTCTATGACTGCACTTTTCATGAATCTTATGCTAAGCTGAAAGTTTCCGGTTTCGCAACGGCTTCTAGTGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTTTAA 786 0.3702 MDLETLYSPYSMLDSNWFVEESQKTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVYDVIKQYRELEEDVCEIEAGNVPIPGYLASSFTFEVVENQNYDGCKRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSASENKQKMGWTSTHYNDGSLQGQDLYDCTFHESYAKLKVSGFATASSDFNKGAVFGIHAL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04314 261 CDD SANT 26 72 IPR001005 -
Trre9g04314 261 SMART sant 23 75 IPR001005 -
Trre9g04314 261 SMART sant 123 173 IPR001005 -
Trre9g04314 261 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Trre9g04314 261 ProSiteProfiles Myb-like domain profile. 19 73 IPR001005 -
Trre9g04314 261 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Trre9g04314 261 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Trre9g04314 261 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Trre9g04314 261 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 208 IPR043363 -
Trre9g04314 261 Gene3D - 125 176 - -
Trre9g04314 261 Gene3D - 19 86 - -
Trre9g04314 261 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Trre9g04314 261 Pfam Myb-like DNA-binding domain 25 71 IPR001005 -
Trre9g04314 261 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Trre9g04314 261 CDD SANT 126 170 IPR001005 -
Trre9g04314 261 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Trre9g04314 261 FunFam Transcription factor SRM1 19 86 - -
Trre9g04314 261 FunFam transcription factor MYB1R1 125 176 - -
Trre9g04314 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04314 Trre-Chr9 50972244 50973675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04314 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04314 - - cam:101492144 461.07