Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04306 ATGACAGCAACCCAAAAATCTAGAAGCAAAAGCCTAACTCGATCTAGTTCTCATTCTTCCACCACCGTCTTCTTTCTCCGCATATTGCTCTCGATCAACGTTCTCTGCTGTTTATCTCACAGTCGCATCTCCATCCTCCGTCTCCACCAAAGGTTTGTTTGGAGGAAGAAGATCGAGCGTGAAACTAAGTTGCAGGAGAAGACTTTATCTCTTCTTCTTAATCTTAGTCTCGACGATGATAGTAAGATTGGACTTGTTGCTGAAGGTGCAATTGATCGTGTCGTTGCGTTTCTTCTACGGGACGCTTCGTCGGATTGTTGTGCTCTCGCTGCGACGATAATCACTAGTCTTGTTGTTGTGGAGGTTAACAAGGCGACTATTGGAGCTTTTCCAGGGGCAATTGAAGCTCTGGTGGCGATTCTTCGTGATGGGAAGGGAAGAGAGAGGAAAGAAGCTGCTACCGCGCTTTACGCGCTTTGCTGTTTTCGCGATAATCGGAAAAGGGAAGGTAGAGAACAATTGGAAAGTTATGGTGGGTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAACTCTAGAGGGATTCAGTATGCATTGTTGGCACTTACTTCACTTTGTTGTCATAGCAAGGAAATGCTTTTGGATGATGTGTTTTTCTCCTATGTGGAGTAA 675 0.4474 MTATQKSRSKSLTRSSSHSSTTVFFLRILLSINVLCCLSHSRISILRLHQRFVWRKKIERETKLQEKTLSLLLNLSLDDDSKIGLVAEGAIDRVVAFLLRDASSDCCALAATIITSLVVVEVNKATIGAFPGAIEALVAILRDGKGRERKEAATALYALCCFRDNRKREGREQLESYGGCVKILVHVLRNGNSRGIQYALLALTSLCCHSKEMLLDDVFFSYVE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04306 224 PANTHER U BOX DOMAIN-CONTAINING 43 210 - -
Trre9g04306 224 Gene3D - 15 217 IPR011989 -
Trre9g04306 224 SUPERFAMILY ARM repeat 61 212 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04306 Trre-Chr9 50934432 50938639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04306 64 218 U-box Gene Family AT4G21350 53.476 1.51e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04306 - - gmx:100785141 199.519