Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04292 ATGGTTAAAGGAAGACAAGGAGAACGCATTAGGCTTTATGTCAGGGGTACAGTCCTTGGATACAAGAGGTCCAAGTCAAATCAGTACCCAAACACCTCTCTAGTTCAGATTGAGGGAGTAAACACCAAGGAAGAGGTTGCATGGTATGCTGGGAAGCGTATAGCATACATTTATAAGGCCAAGGTAAAGAAGGACGGTAGCCACTATCGATGCATTTGGGGAAAGGTTAATAGGCCTCATGGTAACAGTGGAATAGTCCGTGCAAAGTTCACGTCTAATCTGCCACCAAAATCAATGGGAGCCAGGGTTAGAGTATTTATGTATCCAAGCAACATATAA 339 0.4366 MVKGRQGERIRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRIAYIYKAKVKKDGSHYRCIWGKVNRPHGNSGIVRAKFTSNLPPKSMGARVRVFMYPSNI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04292 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Trre9g04292 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
Trre9g04292 112 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Trre9g04292 112 SUPERFAMILY Translation proteins 12 106 IPR009000 -
Trre9g04292 112 FunFam 60S ribosomal protein L35a 7 112 - -
Trre9g04292 112 Gene3D translation elongation factor selb, chain A, domain 4 7 112 IPR038661 -
Trre9g04292 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04292 Trre-Chr9 50797457 50798347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04292 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 90.179 1.11e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04292 K02917 - csav:115697954 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04292 9 50797457 50798347 Trre9g04292 9 50797457 50798347 ECH