Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g04286 | ATGCTAGAAAATGAGGACAATGTTCATGTTGTTTTGGACATAGACAACAATGTTTGTCCCCGGAGTATCGACTCCGGTGACCGGTCAGATGAGGTTGAAATTCAAAGGTCTGAGATTGTTGGAGTGTCTGACAAACAAAGAAGATCTATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTGTTGAGTTGGATCTGGATGGTGTTGTAGTTTCTGATGTTAAGGTACATTTGGATAAAGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAACTTGGATGTTCTTGTAAGGAGGATTTGGCTGCTGCTCATAAACATTGTGCCGAAGCTTGGTTCAAGATTAAGGGCAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAGTATAATGAATCAAGTGATCCTTCCATGGTACCACCAACCGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAAGGACACCGATTTTTAAATTTCCTTCTTGCATGTATGGTTTTCGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTGA | 627 | 0.3971 | MLENEDNVHVVLDIDNNVCPRSIDSGDRSDEVEIQRSEIVGVSDKQRRSIDSSESVESECSVELDLDGVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQYNESSDPSMVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS | 208 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g04286 | 208 | PANTHER | ZINC FINGER, RING-CH-TYPE | 38 | 207 | - | - | |
Trre9g04286 | 208 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 77 | 143 | IPR011016 | GO:0008270 | |
Trre9g04286 | 208 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 145 | IPR013083 | - | |
Trre9g04286 | 208 | SMART | ringv_2 | 84 | 137 | IPR011016 | GO:0008270 | |
Trre9g04286 | 208 | MobiDBLite | consensus disorder prediction | 155 | 175 | - | - | |
Trre9g04286 | 208 | SUPERFAMILY | RING/U-box | 82 | 139 | - | - | |
Trre9g04286 | 208 | Pfam | RING-variant domain | 85 | 136 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g04286 | Trre-Chr9 | 50739409 | 50741804 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g04286 | 42 | 208 | C3H Transcription Factor Family | AT5G05830 | 62.500 | 2.76e-70 | 211 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g04286 | - | - | mtr:11413730 | 345.51 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre13g01510 | 13 | 12241877 | 12245157 | Trre9g04286 | 9 | 50739409 | 50741804 | ECH | |
Trre9g04286 | 9 | 50739409 | 50741804 | Trre9g04286 | 9 | 50739409 | 50741804 | ECH |