Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04286 ATGCTAGAAAATGAGGACAATGTTCATGTTGTTTTGGACATAGACAACAATGTTTGTCCCCGGAGTATCGACTCCGGTGACCGGTCAGATGAGGTTGAAATTCAAAGGTCTGAGATTGTTGGAGTGTCTGACAAACAAAGAAGATCTATTGATTCATCTGAATCAGTTGAATCAGAATGTTCTGTTGAGTTGGATCTGGATGGTGTTGTAGTTTCTGATGTTAAGGTACATTTGGATAAAGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAATTCCTATGGAACTTGGATGTTCTTGTAAGGAGGATTTGGCTGCTGCTCATAAACATTGTGCCGAAGCTTGGTTCAAGATTAAGGGCAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAGTATAATGAATCAAGTGATCCTTCCATGGTACCACCAACCGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAAGGACACCGATTTTTAAATTTCCTTCTTGCATGTATGGTTTTCGCCTTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTGA 627 0.3971 MLENEDNVHVVLDIDNNVCPRSIDSGDRSDEVEIQRSEIVGVSDKQRRSIDSSESVESECSVELDLDGVVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCSCKEDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQYNESSDPSMVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04286 208 PANTHER ZINC FINGER, RING-CH-TYPE 38 207 - -
Trre9g04286 208 ProSiteProfiles Zinc finger RING-CH-type profile. 77 143 IPR011016 GO:0008270
Trre9g04286 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Trre9g04286 208 SMART ringv_2 84 137 IPR011016 GO:0008270
Trre9g04286 208 MobiDBLite consensus disorder prediction 155 175 - -
Trre9g04286 208 SUPERFAMILY RING/U-box 82 139 - -
Trre9g04286 208 Pfam RING-variant domain 85 136 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04286 Trre-Chr9 50739409 50741804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04286 42 208 C3H Transcription Factor Family AT5G05830 62.500 2.76e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04286 - - mtr:11413730 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01510 13 12241877 12245157 Trre9g04286 9 50739409 50741804 ECH
Trre9g04286 9 50739409 50741804 Trre9g04286 9 50739409 50741804 ECH