Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04268 ATGAGTGCACAAGGACAACCACAAGTTCAAGTTCAAGGGATTGAAGAGGCGGTGCTTGATGACATTATCCGGCGACTCACGGAGGTCCGATTAGCCCGACCCGGAAAACAAGTTCAGCTCTCTGAGGCTGAGATCAAGCAACTATGTACTGCTTCTAGAGATATCTTCCTTCAACAACCTAATTTGCTTGAACTTGAAGCCCCTATCAAGATTTGTGGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTCTTTGAGTATGGAGGTTTGCCTCCTAAAGCTAATTATCTCTTTTTAGGGGACTACGTGGATCGTGGGAAGCAGAGCTTAGAAACCATTTGTCTGTTGCTTGCTTATAAAATCAAATATCCTGAAAACTTTTTCCTTTTGAGGGGAAATCACGAGTGTGCTTCCATTAACAGGATATATGGATTTTATGATGAATGTAAGAGAAGGTTTAATGTGAGGCTTTGGAAAGCTTTTACGGACTCTTTTAACTGCCTTCCTGTGGCAGCTCTTATAGATGATAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGACCTCACAAATTTGGATCAAATCAGGATTCTGCCTCGTCCTGTTGCTATTCCCGACACTGGTTTGCTCTGTGATTTGCTTTGGTCTGATCCCGGTAGAGATGTGAAGGGTTGGGGCATGAATGACAGAGGAGTGTCCTACACTTTTGGCCCTGATAAGGTGGCTGAATTTTTAACTAAACATGACTTGGACCTTGTTTGCCGTGCTCATCAGGTTGTAGAGGATGGATACGAATTCTTTGCAGACAGGCAACTTGTGACAATATTTTCGGCTCCAAATTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGACGAGAACTTAATGTGCTCCTTCCAGATTCTTAAACCTGCAGAGAAAAAAAAGTTCGTGATGTCAAACATGTCAAACAAGATGTGA 972 0.429 MSAQGQPQVQVQGIEEAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCTASRDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPKANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTDSFNCLPVAALIDDKILCMHGGLSPDLTNLDQIRILPRPVAIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAEKKKFVMSNMSNKM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04268 323 CDD MPP_PP1_PPKL 18 308 - -
Trre9g04268 323 Gene3D - 11 318 IPR029052 -
Trre9g04268 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 131 136 IPR006186 GO:0016787
Trre9g04268 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 22 315 - -
Trre9g04268 323 SUPERFAMILY Metallo-dependent phosphatases 29 314 IPR029052 -
Trre9g04268 323 FunFam Serine/threonine-protein phosphatase 66 318 - -
Trre9g04268 323 SMART pp2a_7 40 310 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 250 270 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 68 95 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 272 288 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 130 154 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 193 220 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 97 124 IPR006186 GO:0016787
Trre9g04268 323 PRINTS Serine/threonine phosphatase family signature 164 190 IPR006186 GO:0016787
Trre9g04268 323 Pfam Calcineurin-like phosphoesterase 68 260 IPR004843 GO:0016787
Trre9g04268 323 Pfam Serine-threonine protein phosphatase N-terminal domain 19 66 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04268 Trre-Chr9 50452255 50454359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04268 69 254 Calmodulin-binding Proteins AT5G63870 32.432 7.46e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04268 K06269 - gmx:100811593 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04268 9 50452255 50454359 Trre9g04268 9 50452255 50454359 ECH