Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04243 ATGTCGAGAGCTATAGATTTGATTAAGGATATCAACGATGAAAAGGAACTCTGGAAATTTGCTGTTCGGCTGGAAGATGTTTGGAAAACCGGTATTGGACGAGGTGAACATTTGGAATTCCTTATTCTTGACAAACAGGGAGATACTATTCAAGTTGTACTTCCGTCTGATCTTTGTCCTTTGTTTGAGTCTAAACTGGAAGAAGGGACCACCTACATTATGAAGAACTTTAAGGTTCAACCTAATGACCTTAAGGTGAAGTTTTGTACTCACCCTTTCACACTGGTTGCTGTTGGGGGTGAAGGAGGGTCTGATATCATTCCAACAAAGCTTCCTAACATTCCATCATACAAGTTTAACTTCAAAAGTTTTGATGACATTAAAAATGGAAAATATCGTCATGATCTGTTAGTAGATATCATAGGGGCTGTTTATGATGTTCAACAGGATAAAAAAGGGTTTAGCACAAAAAAGCTTCCGACTACCTTTTCTTTGGCTGATGCATCAATGAACATACTAACTTGCTCTCTATGGGGAAAGTTTCAAACTGAATTTCTGGAGAAATACAACGAACTTGCCGGAGAAGGTCCAGTAATTGTCATTCTCAAACATGCTGCTATCAGAGAACCTCAAGGTATATATGACTTGCAAATCACAAATGCTTGGAGTGGAACAAAGTTAATTATGGATCCTGATTTCAAGGAAGTCAAGGACTACAAAACATGCTTACCTCAGGATTTTGTTTCCCAAACACAATCTGCAATCAACTTGAGTGAGGGTAGTGGTCTACTACAACAAAACTCTCAAAGTTCTCAATACTCTGCGGGCTCTCGCTATGCATTTCGTGCCCCTGTTACTCACATCTCTCAATTCATTACACTCCCTGAGGAGGAAATTGTCACTACGGTTGCAACTCCCCACCATGTATGTATTTCAAAAAATGGCTGGTTTTACAAATCTTGTGCCCAATGTCCTAAGGCACTTATTACTGATACTCCTCCTTACAAGTGTAAAGTAGACTCTCATGTTACTATTGAACCTGTCATCAAGTATAGGCTTGAAGCTGAAGTTCGATTTGAAGGTCATAAAGCCAGATTCCTTTTTTGGGATCGGGAATGTACTGAGTTAATAGGGAAAACTGCAGCTGAGTTGCAAACTATTATGCTTGAGGCGGGTCAATTTGATTCCCGTGAATATCCTGTTAACCTTGACGATATCACGGGCACTGAATTGGCTTTTAAAGTCAAAATTCAGGCCAAAGGAAAACTTGCAAGTGTCCTTACTTATAAAACTGATCCAGAAATTATCCAACATCTCAAAGACCAGATCAAGCTGTGTGAGATTCCATCTCTTTTGGCCCTCACTGCTCCCATTGCTGGAGAGTCTTCACAATTGATGCTCGAAGATGTACCAGAAACAAGTGATATAGCTCCTTTCCCCACCCAAGACCTCTCGGCCACCGCTGAATATGATCCCGACTTTATCAAAATGCACACCCCAGCTAAAAGATCAGGCGAAGATTCTCCAACTGATGAGCCTACTTCTGCCAAGCTCTCTTCAAACAAAATCATGCTCAGGTCTACAATCAAGAAAGAAAAAGGGTCTACCAAAGATTGA 1617 0.4051 MSRAIDLIKDINDEKELWKFAVRLEDVWKTGIGRGEHLEFLILDKQGDTIQVVLPSDLCPLFESKLEEGTTYIMKNFKVQPNDLKVKFCTHPFTLVAVGGEGGSDIIPTKLPNIPSYKFNFKSFDDIKNGKYRHDLLVDIIGAVYDVQQDKKGFSTKKLPTTFSLADASMNILTCSLWGKFQTEFLEKYNELAGEGPVIVILKHAAIREPQGIYDLQITNAWSGTKLIMDPDFKEVKDYKTCLPQDFVSQTQSAINLSEGSGLLQQNSQSSQYSAGSRYAFRAPVTHISQFITLPEEEIVTTVATPHHVCISKNGWFYKSCAQCPKALITDTPPYKCKVDSHVTIEPVIKYRLEAEVRFEGHKARFLFWDRECTELIGKTAAELQTIMLEAGQFDSREYPVNLDDITGTELAFKVKIQAKGKLASVLTYKTDPEIIQHLKDQIKLCEIPSLLALTAPIAGESSQLMLEDVPETSDIAPFPTQDLSATAEYDPDFIKMHTPAKRSGEDSPTDEPTSAKLSSNKIMLRSTIKKEKGSTKD 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04243 538 SUPERFAMILY Nucleic acid-binding proteins 119 248 IPR012340 -
Trre9g04243 538 Gene3D - 3 99 IPR012340 -
Trre9g04243 538 MobiDBLite consensus disorder prediction 489 538 - -
Trre9g04243 538 SUPERFAMILY Nucleic acid-binding proteins 297 418 IPR012340 -
Trre9g04243 538 CDD RPA1_DBD_B_like 139 241 - -
Trre9g04243 538 Gene3D - 267 432 IPR012340 -
Trre9g04243 538 MobiDBLite consensus disorder prediction 511 525 - -
Trre9g04243 538 CDD RPA1_DBD_A_like 22 93 - -
Trre9g04243 538 Gene3D - 113 249 IPR012340 -
Trre9g04243 538 MobiDBLite consensus disorder prediction 495 510 - -
Trre9g04243 538 SUPERFAMILY Nucleic acid-binding proteins 6 96 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04243 Trre-Chr9 50226521 50229381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04243 1 417 Core DNA Replication Machinery Family AT5G08020 22.603 4.70e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04243 - - tpra:123891620 314.309