Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04239 ATGAAGGCATTGATTCTGGTTGGAGGGTTTGGAACTAGGTTGAGGCCATTGACACTCAGTGTCCCTAAGCCTCTTGTTGATTTTGCTAACAAACCCATGATTCTGCATCAGATAGAGGCTCTTAAGGCCGCTGGAGTTACTGAAGTGGTACTGGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGCAAAGATCGGGATTAAGATTAGTTGTTCGCAAGAAACTGAACCACTAGGAACTGCAGGCCCCCTGGCTCTCGCTAGGGAAAAGCTGATAGATGACTCTGGAGAGCCTTTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAACGAAATGATTGAATTCCACAATTCCCATGGAGGGGAGGCTTCCATAATGGTCACAAAGGTTGATGAGCCATCGAAATATGGTGTGGTTGTGATGGAGGAGACCACAGGGCAGGTTGAGAAATTTGTTGAGAAACCAAAATTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACCTATTGAACCCCTCTGTTTTGGACCGAATTGAACTGAGGCCCACTTCTATTGAAAAAGAAATTTTTCCTAAGATTGCTGCAGAGAAAAAACTATATGCAATGGTCTTGCCTGGATTCTGGATGGACATTGGACAACCGAGGGACTATATTACTGGCTTGAGACTTTACCTGGACTCATTGAGAAAGAAGTCTTCTTCTAAGTTGGCCAGTGGCTCTAACATTGTAGGGAATGTTATTGTGGATGAAACAGCCAAAATTGGTGAGGGATGTCTGATTGGACCTGATGTTGCTATCGGTCCTGGCTGCATTGTTGAGTCTGGTGTTAGGCTTTCACGCTGCACAGTTATGCGAGGAGTTCGGATTAAGAAGCATGCTTGCATCTCCAGCAGTATTATTGGGTGGCATTCAACTGTTGGACAATGGGCTCGAGTGGAGAATATGACTATCCTCGGAGAAGATGTTCATGTATGTGATGAGATTTACAGCAATGGTGGTGTGGTTTTGCCTCACAAGGAGATCAAGACAAATATTCTGAAGCCGGAGATTGTCATGTAA 1086 0.4355 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAAGVTEVVLAINYQPEVMLNFLKDFEAKIGIKISCSQETEPLGTAGPLALAREKLIDDSGEPFFVLNSDVISEYPLNEMIEFHNSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSSKLASGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04239 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 233 IPR029044 -
Trre9g04239 361 Gene3D Hexapeptide repeat proteins 235 357 - -
Trre9g04239 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Trre9g04239 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Trre9g04239 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058
Trre9g04239 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Trre9g04239 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Trre9g04239 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04239 Trre-Chr9 50172312 50173937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04239 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.116 9.38e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04239 K00966 - aew:130793371 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04239 9 50172312 50173937 Trre9g04239 9 50172312 50173937 ECH