Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04233 ATGGCTGAGATTTGTTGTGGTGCTGTTGGTGCCGGAGAAACTACGACTGCAACTATCGAACCAAACACACGAAACTCCGTTCGCCGGAGCTTGGATTTTCTTCCGTTGAAATACATAGCTGACATGGCAATTTCGTCGGAAAATATTAGCCGAAAACGTCAGAAGCTAGATCAATCTATTTCTCCTCCGTCACAAAAGAGCGAAAAAGAAGTTGACAGTTCCGAATTAAGCACGAATGAAAAATCTACGAAACACGAAGTTGTTTTGGTTACGAATCGTTCGAATGTTCCTGAGATAGAAAACGAGGTTGTTGTTGTTGATGAGTGTCCTAAGTATGGAATAACATCGGTTTGTGGAAGAAGAAGAGAAATGGAAGATTCTGTTTCGGTGCATCCATCGTTTTGTGAAGAAAAGAGTGAACAAAAACAGAAACCGTTTCATTTCTTCGGTGTTTATGACGGTCATGGTTGCTCACATGTTGCAACTATTTGTAAACAAAGGTTACATGAAATTGTTGATGAAGAAATAAACAAAGAGAAGGAGAAAGAGAGCGTTGACTGGAAGTCAACGATGGAGAAGAGTTTCATTCGCATGGATGAAGAGGTTTTGAATTCCACCAAAACCAAACAAAGTTTCGCTTGTAAGTGTGAGCTTCAAACTCCTCACTGTGATGCTGTTGGCTCCACCGCCGTTGTTGCCGTTGTCACGCCGGAGAAAATCATTGTCTCCAATTGTGGTGATTCTCGTGCTATTCTTTGCCGTAAAGGTGTCGCCGTTCCTCTTTCCTCTGATCACAAGCCGGATCGACCCGATGAGTTAGATCGGATCAACTCCGCCGGAGGACGTGTGATCTATTGGGATGGTGCAAGAGTGCTTGGAGTGTTGGCCATGTCAAGAGCCATAGGGGACAATTATTTGAAACCGTATGTTATTTCGGAACCGGAGGTAACGGTAACGGAGAGGAGTGACGAGGATGAGTGTTTGATACTAGCCAGTGATGGTTTATGGGATGTGGTGGAAAATGATACGGCATGTAGGGTAGTGCAGATGTGTTTAAAAGCGGAGAAGACGGTGCCGCCGGGGTCACCAGGGAGTGTGGTGACGGGAAATGGGTCAGATAAGGCGTGTTCTGATGCTTCAATTTTGTTGACGAAGTTGGCTTTGGCAAGGCATAGTTCGGACAATGTTAGCGTGGTGGTTGTTGATTTGAAGAGAGATCAACTTCAACAATAA 1233 0.4444 MAEICCGAVGAGETTTATIEPNTRNSVRRSLDFLPLKYIADMAISSENISRKRQKLDQSISPPSQKSEKEVDSSELSTNEKSTKHEVVLVTNRSNVPEIENEVVVVDECPKYGITSVCGRRREMEDSVSVHPSFCEEKSEQKQKPFHFFGVYDGHGCSHVATICKQRLHEIVDEEINKEKEKESVDWKSTMEKSFIRMDEEVLNSTKTKQSFACKCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAILCRKGVAVPLSSDHKPDRPDELDRINSAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDEDECLILASDGLWDVVENDTACRVVQMCLKAEKTVPPGSPGSVVTGNGSDKACSDASILLTKLALARHSSDNVSVVVVDLKRDQLQQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04233 410 MobiDBLite consensus disorder prediction 50 84 - -
Trre9g04233 410 FunFam Protein phosphatase 2C 37 106 410 - -
Trre9g04233 410 Gene3D - 98 409 IPR036457 -
Trre9g04233 410 CDD PP2Cc 111 355 IPR001932 -
Trre9g04233 410 SMART PP2C_4 97 401 IPR001932 -
Trre9g04233 410 ProSitePatterns PPM-type phosphatase domain signature. 148 156 IPR000222 GO:0043169
Trre9g04233 410 Pfam Protein phosphatase 2C 111 395 IPR001932 -
Trre9g04233 410 SUPERFAMILY PP2C-like 109 404 IPR036457 -
Trre9g04233 410 ProSiteProfiles PPM-type phosphatase domain profile. 111 403 IPR001932 -
Trre9g04233 410 PANTHER PROTEIN PHOSPHATASE 72 403 IPR015655 GO:0004722|GO:0006470
Trre9g04233 410 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04233 Trre-Chr9 50110378 50112076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04233 110 405 PP2C-type Phosphatase Gene Family AT1G07430 64.062 6.98e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04233 K14497 - gmx:100776356 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04233 9 50110378 50112076 Trre9g04233 9 50110378 50112076 ECH