Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04232 ATGGAGGGATTTCACTCTGATCAGTACTGGTTATGGATGAAGAGAAGACAAGTTGAAGCACCAATAGAATCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGAATATACTTAATGGTAGCATATGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATCCATAGGAGAGACAGAGCTAGGCTCAAACAAAATCTTAGCCCTCATAATGAAATTCAAAAGAATGAATTCAAGTTTTCAACAAACTCATCACTAGTTAATGCAAGAGAAGAAAATTTTAAGGATTGTGTTGAAACAAGTTTGTCTTTGGATTTGGGATTGACTTCAATGTTTGGACAAAATTCATCAACTATTCTGTTGGGGAGTCTGGGGGAGCGTCAGAAGCAACATCGTGTTTCTTGTGAGGAAAAAGGTATGATCAGTTGTAAGAGATTGAAGACTAATAACATATCTTCATTGCCTTCTGTTTTTCTCAAGACATGTTCAAATGATCATCATAGGTTAATGGATTTTCAACCTTCAGAAATTGTGCTTGGACTTAATCATGGAATGGAAGATTTAGATCTTGAGCTTAGGCTAGGGAAACAACAGAAGGTTATTAAGTAG 654 0.3654 MEGFHSDQYWLWMKRRQVEAPIESWEEKAFAEDAARNILNGSIWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPHNEIQKNEFKFSTNSSLVNAREENFKDCVETSLSLDLGLTSMFGQNSSTILLGSLGERQKQHRVSCEEKGMISCKRLKTNNISSLPSVFLKTCSNDHHRLMDFQPSEIVLGLNHGMEDLDLELRLGKQQKVIK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04232 217 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Trre9g04232 217 Pfam C2H2-type zinc finger 49 73 - -
Trre9g04232 217 SUPERFAMILY beta-beta-alpha zinc fingers 46 76 IPR036236 -
Trre9g04232 217 SMART c2h2final6 49 71 IPR013087 -
Trre9g04232 217 Gene3D Classic Zinc Finger 45 110 - -
Trre9g04232 217 PANTHER OS07G0101800 PROTEIN 23 212 - -
Trre9g04232 217 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04232 Trre-Chr9 50100710 50101456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04232 10 76 C2H2 Transcription Factor Family AT4G17810 63.768 7.51e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g04232 zf-C2H2_6 2.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04232 - - tpra:123922631 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04232 9 50100710 50101456 Trre9g04232 9 50100710 50101456 ECH
Trre5g01921 5 14316980 14317919 Trre9g04232 9 50100710 50101456 PCT